New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	30 (0.740)	29/284	0.4	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

AATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292902‑1293172                                                                                                                                          |                                                                                                                                      aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAAGGTAAGGAATTCAAAATTGTTCTTTATTGTGTTCCTggtaa                                                                                                                                  <  2:889‑M2/143‑6 (MQ=255)        aGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGTGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                           >  2:220905‑M2/1‑131 (MQ=255)          tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                         >  1:76382‑M2/1‑129 (MQ=255)                 cTCATTGCAGTAAGCTATTTCTTGTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                  >  2:544046‑M2/1‑122 (MQ=255)                    aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                               >  1:131748‑M2/1‑119 (MQ=255)                     ttGTAGTAATCTCAAACTTATAATGGGTGGACTAGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatag                                                                                                              <  2:445563‑M2/143‑26 (MQ=255)                             aTCTCAAACTTATTTTGTGGTGTTTTGTTGAGGTAATAATAGAGCCCTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttat                                                                                                      >  2:544003‑M2/1‑110 (MQ=255)                                tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAGTAGCCAGGCATGTAAGGAATTCATAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                   <  1:339758‑M2/143‑37 (MQ=255)                                tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                   >  1:317163‑M2/1‑107 (MQ=255)                                           ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                        >  1:252543‑M2/1‑96 (MQ=255)                                           ttGGGGTGGTTTGTTGAGGTAATAACAGAGGCTTAAATTCAGTTGTGCAATAGCCAGGGATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCAGggtaatgacgccaactgaatgatagtgatttatgttaagataaggca                                                                                        <  2:485970‑M2/143‑48 (MQ=255)                                                gtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGACTCCAAAATTGCTCTTTATTTTGTGCCGggtcatgactccaacttatagatagtgaaatatgtacacataatgccagatg                                                                                   <  1:53114‑M2/143‑53 (MQ=255)                                                 tggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga                                                                                  >  1:558590‑M2/1‑90 (MQ=255)                                                    tttGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTCTTTTAAGTTCTGTGGggtaagaacaccaacttattgatagtgttttatgttcagataatgcccgatgactt                                                                               <  2:712680‑M2/143‑57 (MQ=255)                                                     ttgttgAGGTAATAATAGAGACTTAAATTCAGGTGTGCAATAGCCAGGAATATAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgacttt                                                                              <  2:383963‑M2/143‑58 (MQ=255)                                                      tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTATTTCTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatggctttg                                                                             <  1:330857‑M2/143‑59 (MQ=255)                                                            ggTAATAATAGAGCCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                       >  1:582500‑M2/1‑79 (MQ=255)                                                                    taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                               >  2:430812‑M2/1‑71 (MQ=255)                                                                         ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                          <  1:471386‑M2/143‑78 (MQ=255)                                                                            taggttcggtTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCTggtaatgactccaacttattgatagtgttttatgttcagataatgccagatgactttgtcatgcagctccaccgattttg                                                       >  2:655955‑M2/5‑63 (MQ=255)                                                                            tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTGTGAAGGATGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                       >  2:154522‑M2/1‑63 (MQ=255)                                                                             aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                      >  1:320131‑M2/1‑62 (MQ=255)                                                                                        tgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttggagaacgacagcg                                           <  2:382460‑M2/143‑93 (MQ=255)                                                                                                ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                   >  1:519488‑M2/1‑43 (MQ=255)                                                                                                 cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                  <  1:658984‑M2/143‑102 (MQ=255)                                                                                                          aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                         <  1:497098‑M2/143‑111 (MQ=255)                                                                                                           aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcgcgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                        >  2:194577‑M2/1‑32 (MQ=255)                                                                                                                            cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagccccaccagtttttcgaccgacagtgacttccctcccagccgtgccaggcgctgcctgagat       <  2:180887‑M2/143‑129 (MQ=255)                                                                                                                              ttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcaacttccgtcccagccgtgccaggtgctgcatcagattc     <  1:602330‑M2/143‑131 (MQ=255)                                                                                                                                 ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg  >  1:196160‑M2/1‑10 (MQ=255)                                                                                                                                          |                                                                                                                                      AATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292902‑1293172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.