New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3222461 =	39 (0.960)	3 (0.080)	3/258	5.9	7.7%	intergenic (+12/‑172)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit
	?	NC_000913	3222493 =	37 (1.000)					intergenic (+44/‑140)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGAGGCCCTATG  >  NC_000913/3222354‑3222635                                                                                                                                            |                                                                                                                                               gTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGtgctgc                                                                                                                                             >  1:141063/1‑143 (MQ=255) gTTAACCTGCTGTATGAAACAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGtgctgc                                                                                                                                             <  2:460702/143‑1 (MQ=255)      ccTGGTGTATGAAACAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGttt                                                                                                                                        <  2:167967/143‑1 (MQ=255)               tGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAGACTGCGCGGCACGACCCGTTGAATCTCCTTCCACACTGGCGGGCGACCGTTTTTGCCGGAGAGTGCGGCCGGTTATATTcaag                                                                                                                               >  2:24373/1‑140 (MQ=255)                    aaGCCCGCGATGGTCGCGCGCTGCCCCTGTTAGTCTGCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCa                                                                                                                          <  2:475207/143‑1 (MQ=255)                       cccGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGtt                                                                                                                       >  1:272978/1‑143 (MQ=255)                          gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTaaa                                                                                                                    <  1:323802/143‑1 (MQ=255)                          gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTCATCCCGTTaac                                                                                                                    >  1:553982/1‑142 (MQ=255)                          gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTGTCGTGATCCAGTTaaa                                                                                                                    >  2:635274/1‑143 (MQ=255)                          gcgATGGTCGCGCCCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGTTGCCGTTTATTTTCGTGATCCAGTTaaa                                                                                                                    <  1:379736/143‑1 (MQ=255)                                    cgcgcTGCCGCTGTTAGTCTTCGTTCCCAGCAAATGAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGGTTTTGCGGGGCAGTGCTGCCGTTTATGTTCGGGATCCAGTTAAAGTGAATGCaa                                                                                                          >  1:462717/1‑142 (MQ=255)                                         tGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTCCACCCTGTCCGGCAATCGTTTTTGCCGGACAGTGCGGCCTTTTATTTTCCTGATCCATTTAACGTAAATACATTTccc                                                                                                     >  1:260130/1‑143 (MQ=255)                                                   agccTTCGTGCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTCCACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACtttt                                                                                           <  2:594610/140‑1 (MQ=255)                                                   aGTCTGCGTGCCCAGCAAATTAAAGCTGCGCGGCACGACTCGTTAAATCTCCTTTCTCACTTTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACtttt                                                                                           <  2:553982/143‑1 (MQ=255)                                                     tCTTCGTTCCCCGCACATTAAACCTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                                                         <  2:459511/143‑1 (MQ=255)                                                     tCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACAACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                                                         <  1:133506/143‑1 (MQ=255)                                                     tCTTCGTTCCCACATTATTAAATCTGCGCGTCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                                                         <  2:2707/143‑1 (MQ=255)                                                               cagagaaTTAAGGCTGCGCGGCACGACCCGTTGAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAAttt                                                                               <  2:506413/138‑1 (MQ=255)                                                                aGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGCCTTTGCCGGACAGTGCTGCCATTCCTTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAATAAAAAttat                                                                              >  2:153746/1‑141 (MQ=255)                                                                 gCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTa                                                                             <  2:292020/143‑1 (MQ=255)                                                                  cAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACCCACTGTCCGGCACTCGTTTTTGCCGGCCCGTGCTGCCGCTTATTTTCGTGATCCAGTTAAAGTAACTGCCTTTACCTGCCACTTTTTCCTAAACATCTTAc                                                                            >  2:620666/1‑143 (MQ=255)                                                                   aaaTTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACt                                                                           >  1:470499/1‑143 (MQ=255)                                                                         gaaCGGCGAGGCACAACCCATTAAATCCCCATACACACCGGCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTc                                                                     <  1:73632/142‑1 (MQ=255)                                                                             tGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCa                                                                 <  2:523568/143‑1 (MQ=255)                                                                              gcgcGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGCCAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTCAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAg                                                                >  2:91868/1‑143 (MQ=255)                                                                                          ccGTTAAATCCCCTTACACACTGTCCGGCAATCGGTGGTTCCGGACACTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGCAAATGCATGTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACaaa                                                    >  2:295706/1‑143 (MQ=255)                                                                                           cGTTAAATCCCCCTACACCCTGCCCCTCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAAc                                                   <  2:475409/143‑1 (MQ=255)                                                                                               aaaTCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTAcc                                               >  1:549997/1‑143 (MQ=255)                                                                                                  tCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATc                                            >  1:417973/1‑143 (MQ=255)                                                                                                  tCCCCTTACACACTGTCCGGCAAGCGTTTTTGGCGGCCGTTACGTCCGGTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATc                                            <  2:152151/143‑1 (MQ=255)                                                                                                   ccccTTACACACTGTCCGGCAATCGTTTTTTTTTTTCTTTGCTGCCGTTTATTTCCTTGATCCATTTAAAGTGAATGCATGTACCTGCTAGTTTTTATTCAAAATTTTACTTAACTCCCCTGCAATTACACATACTACCATct                                           >  2:245338/1‑142 (MQ=255)                                                                                                      cTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTCTTTTCGTGATCCAGTTAGCGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCACTTACACAAACTACCATCACCa                                        >  2:323475/1‑143 (MQ=255)                                                                                                      cTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTCAACTCCCCAGCCATTACCCAAACTACCCTCACCa                                        >  2:703878/1‑143 (MQ=255)                                                                                                            cacTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAACTTTACTAAATTCCTCTCCATTTACACAAACTACCATCACCAACAATg                                  >  2:150974/1‑143 (MQ=255)                                                                                                               tGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGtt                               <  1:701139/143‑1 (MQ=255)                                                                                                               tGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGtt                               <  1:609530/143‑1 (MQ=255)                                                                                                                         tCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGGTACTTTTTAGTAAGAATTTTACTAAACTCCCCAGAGATTACACAAACTATCATCACCATGAATGGTTCCGATTtctc                     >  1:17934/1‑143 (MQ=255)                                                                                                                                   cGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGa           <  2:272978/143‑1 (MQ=255)                                                                                                                                   cGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATCAATGGTTCCGATTCCTCTCTACCGGGa           >  2:614562/1‑143 (MQ=255)                                                                                                                                     gACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGGACCGATTTCACTCTACCGGGAgg         >  2:646130/1‑143 (MQ=255)                                                                                                                                            ctgcCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATATTACTATACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGAGAGGCCCAATg  >  1:256416/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                               GTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGAGGCCCTATG  >  NC_000913/3222354‑3222635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.