New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3424227	NA (NA)	5 (0.120)	3/280	6.3	NA	noncoding (2557/2904 nt)	rrlD	23S ribosomal RNA of rrnD operon
	?	NC_000913	= 3424232	NA (NA)					noncoding (2552/2904 nt)	rrlD	23S ribosomal RNA of rrnD operon
Rejected: Coverage evenness skew score above cutoff.

CCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAAC‑AGCATCACCCTTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGC  >  NC_000913/3424098‑3424329                                                                                                                                        |                                                                                                  ccAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTACTCCAGCACCCGCGGCCCATAGGGCCCGAACTGTCTCGCGACCAACCAAACCCAGCCCGCGTACCACTTTAGATGGCGACC‑Aggcagacc                                                                                           >  2:116728/1‑136 (MQ=1)                                                                                          cACGACGTTCGAATCCCAGCTCGCTCACCACTTGAGATGGCACCCAAACGACCCCGTTCGCA‑CTCCTTGAACCCCATTATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGc  <  2:154399/143‑1 (MQ=0)                                                                                                                                        |                                                                                                  CCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAAC‑AGCATCACCCTTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGC  >  NC_000913/3424098‑3424329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.