| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,859 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 33 [0] | [0] 33 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 0 (0.000) | 33 (0.880) | 32/264 | 0.2 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGC > NC_000913/3815814‑3816072 | gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagccgcctcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa > 1:724207‑M2/128‑143 (MQ=255) tttcaataacccggcgctgatatggtttcatgccttcgctccgcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg < 1:643036‑M2/22‑1 (MQ=255) ttcaataaactggcgctgatatggtttcatgccttcgctcatgatcttacttttgtagagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc > 1:124354‑M2/121‑143 (MQ=255) tcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATCATgcg > 1:493297‑M2/120‑143 (MQ=255) ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc < 2:264459‑M2/27‑1 (MQ=255) aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGGACTTCAGTGGTGCCCCCGt > 1:391160‑M2/115‑143 (MQ=255) tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc < 1:590644‑M2/49‑1 (MQ=255) gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGAAGTTCTACTTTTGGCCCGTCTTCGGTCATCACTACGTTCATGt > 1:495704‑M2/91‑143 (MQ=255) ttcgctcctcatcttacttttctacagacaaaaaaaatgctactcatcagtcgacttaaaaatcagtttgccagcgccgcctactacCGTCCCCGGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTACGTTCATGTCgg > 2:484870‑M2/88‑143 (MQ=255) tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaatttgccaccgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGCCATCCCTACGTTCACGCCGGTGCCTGCg > 2:234165‑M2/80‑143 (MQ=255) catcttactgttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg < 2:395361‑M2/65‑1 (MQ=255) acttttctacagacaaaaaaaaggcgacgcatcagtcgccttaaaactcattttgcctgcggcgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt < 2:352320‑M2/71‑1 (MQ=255) cttatgaacagagaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCTATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc < 1:232792‑M2/72‑1 (MQ=255) ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt > 1:396083‑M2/71‑143 (MQ=255) ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGGCGGTCTCTGCGGCAGAGTCTTc > 1:220643‑M2/69‑143 (MQ=255) acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg > 1:417489‑M2/65‑143 (MQ=255) agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagttggccagcaccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa > 1:543122‑M2/63‑143 (MQ=255) gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTAt > 1:226382‑M2/62‑143 (MQ=255) cagaaaaaggcgactcatcagtcgccttaaaagtcagtttgccagcgccgccttctgcCTTGCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc < 2:634293‑M2/85‑1 (MQ=255) aaaaatgcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGa > 2:560173‑M2/56‑143 (MQ=255) aaaaggctactcatcagtagccttaaaaagcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt < 1:492388‑M2/89‑1 (MQ=255) agaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTTCACTTCTATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc < 2:634682‑M2/90‑1 (MQ=255) aaaggcgcctcctcagtcgccttaaagatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGGTTCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc < 2:101056‑M2/90‑1 (MQ=255) tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTATGTGCGGCTGAGTCTTCAACGTATTCCAGATCGCCAACcgt > 1:495683‑M2/45‑142 (MQ=255) atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCAATCAACAGACATCGCTACGCCCACCTCGTTCTTTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt > 1:200573‑M2/43‑143 (MQ=255) tcagtcgccttaaaaatcagtttgccagcgccgccttcagcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc < 1:54499‑M2/102‑1 (MQ=255) tcgccttaaacatccgtttgccagcgccgccttctgcCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg < 2:561969‑M2/106‑1 (MQ=255) aagaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAt < 1:437739‑M2/114‑1 (MQ=255) aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCCGATCGCAAACCGCTCCGCCCTTCCCAATTc > 2:166095‑M2/28‑143 (MQ=255) ccagttcgccagcgccgccttctgcCGTCCCCTGCACTTCAACGATGCGCCCGTCTTCGGTCATCACTACGTCCATGTCGGTCTCTGCGGCACAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCg < 2:462052‑M2/118‑1 (MQ=255) agtttgcctgcgccgccttctgcCGTCCCCTGCACGTCAATGGTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc < 2:727005‑M2/120‑1 (MQ=255) agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTg > 1:506522‑M2/16‑143 (MQ=255) ccgccttctgcCCTCCCCTGCACTTCATTGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCGCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc < 2:194192‑M2/132‑1 (MQ=255) | CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGC > NC_000913/3815814‑3816072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |