| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 95.2% | 170.2 / 1.1 | 42 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (22/18); total (23/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 97.6% | 168.4 / ‑1.5 | 42 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base . (22/18); minor base T (0/1); total (23/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
TTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCAC‑CCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTG > NC_000913/2173222‑2173497 ||| tttGCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGAGAGTTATACTGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac‑cgc < 2:1027197/143‑3 (MQ=255) ttCCACGATGCACGGCGACCGCCATTGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATAGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac‑cgcc > 2:811528/1‑140 (MQ=255) ttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGTCAGCACCTGATTACCCGGCACACAAACAGCAATTAACATGGTGAGTGGGATAAACATCAGGCTCGCCGCTaccac‑ctcc > 1:225903/1‑140 (MQ=255) ttCCACGAGGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac‑cgcc < 1:305967/143‑4 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac‑cgccgta < 1:299127/143‑7 (MQ=255) aCGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGCTGGTGGCAAGATCGCCAACCGGCAGCACCTGATTACCCGGCACACAATCAGCAATTAAAATGGTGAGTGAGATAAAAATCAGGCTAACCGAAaccac‑cgccatat > 1:64150/1‑136 (MQ=255) aCGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac‑cgccgtat < 1:1012852/143‑8 (MQ=255) cGATGCACGGCGACCGCCATCGCCACGAAGACGCCGATGGTGACAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTACAATGGTGGGTGGGCCAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATg > 2:833788/1‑143 (MQ=255) cACGGCGACCGCCATCGCAACGAAGAAGCGGATGGTGGCAAGAGCGCCAAACGGCAGCACCTGATTACGCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGGTTGCTGATACCA‑‑‑CCGCCGTATGTCCca < 2:606202/143‑1 (MQ=255) ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCGGGCACACGAACAGCAATTACAAAAGCGAGTGGGATAAAAATCAGGCTGGCCGCAACCA‑‑‑CCGCCGCATGACCCCGCAGCCAc > 2:78809/1‑143 (MQ=255) cagcGCCAAGAGGAAAGCGATGGGGGGAAGACGGGGAAACGGCAGCACCTGAATACATGGCACTCAAACGACAATGAAAAGGGTGAGTGGGATAAAAATCAGGGTTGCCGAGACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCg < 2:962270/140‑1 (MQ=255) tCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGa > 1:271991/1‑143 (MQ=255) tCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGa < 1:974946/143‑1 (MQ=255) gCCACGAAGAAGCCGATGGTGGCAAGATCGCCAGACGGCAGCACCTGATTACCCGGCACACAAACAGCAACAATAAGGGGGTGTGGGATAAAAAGCAAGCTTGCCGATAC‑‑C‑CCCGCCGTATGTCCCAGCAGCACAGCCCGAtg > 2:644454/1‑142 (MQ=255) ccACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGCGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCACCAACACCGGATCa > 2:435731/1‑143 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTTATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCaa < 1:508094/143‑1 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCCTATGACCCAGCAGCAACACCGGATcca > 2:160118/1‑141 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCACGC‑‑‑CTGATTCCACTTTCTTTTTATGTCCCAGCAGCAACGCCGGATCaa < 1:814406/143‑1 (MQ=255) aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:645771/1‑143 (MQ=255) aGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAAGTAAAATGGTGAGTGGGAGAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAACAAAGCCAATAAGGAACTCCTGAcc > 2:718797/1‑143 (MQ=255) gaccGCCAAACGGCATCACCGGATTACGCTGCACACAAGCGGCAATTAAGAGGGTGAGTGGGATAAAAATCGGGCGGGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg < 1:786056/140‑1 (MQ=255) aTCGCCAAAGGCCAGCACCTGATGACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc < 1:1052133/143‑1 (MQ=255) tCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAACACCTGCccgcc > 2:215466/1‑143 (MQ=255) gCCAACCCGCAGCCGCTGAGTACCCGGCACACCAACAGCAGTTCAAACGGTGGGTGGGATAAAAATCCGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGa < 2:994512/143‑1 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGa > 2:523985/1‑143 (MQ=255) aaCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCCATCAGGAACTCCTGACCGCCGACCtt > 1:407781/1‑143 (MQ=255) aCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCGGTAAGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCCAACTTCGCCTGTaa > 2:957323/1‑143 (MQ=255) ccTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaaa > 2:500595/1‑143 (MQ=255) cttgttACCCGGCACACAAACAGCAATTACAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 2:1061708/139‑1 (MQ=255) cGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTACTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 1:897609/1‑143 (MQ=255) gCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTCGCCTGTAACCCACTACGAGcc > 2:617202/1‑143 (MQ=255) aGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCACGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCCGCTTGGCGa > 2:686673/1‑143 (MQ=255) aaTTGAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGa > 1:1115423/1‑97 (MQ=255) aaTTGAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGa < 2:1115423/97‑1 (MQ=255) aaTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTACACGACTACGAGCCTGCTTAGCGATgg > 1:986424/1‑143 (MQ=255) aaaaTGGTGAGTGTGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGGCCGCCGAACTGCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGt < 2:470872/143‑1 (MQ=255) aaaTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGtt > 1:823793/1‑143 (MQ=255) aagggTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTa < 2:341262/140‑1 (MQ=255) gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccat < 2:1130698/143‑1 (MQ=255) aTAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTGAACCATCAaggat > 2:863536/1‑143 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGACTACGAGCCTGCTTCGCGATGGGCGCTACACCATCCatgatg > 1:57395/1‑143 (MQ=255) aaaaTCAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCACGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTACACGACTCCGAGCCTGCCTCGCGCTGGGCGCTAACAGATCCatgctcgg > 2:806674/1‑138 (MQ=255) cactccggCTTGACGATGCCA‑‑‑CCGCCGTATGTCCCGGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGt < 2:344064/137‑1 (MQ=255) cAGGCTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa < 1:768946/143‑1 (MQ=255) cctGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc < 2:696353/141‑1 (MQ=255) cTTGCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc < 1:971510/143‑1 (MQ=255) ggCCGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 1:811528/142‑1 (MQ=255) ccGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGt > 1:818327/1‑143 (MQ=255) cGATACCA‑‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCGGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTg < 2:645771/143‑1 (MQ=255) ||| TTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCAC‑CCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTG > NC_000913/2173222‑2173497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |