| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423376 = | 59 (1.230) | 6 (0.130) | 5/278 | 6.2 | 14.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946822 | 11 (0.230) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGA > NC_000913/3423234‑3423518 | gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGa < 2:318075/143‑1 (MQ=255) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTACCCGCGCGTTTTGCCTACTCGGGAGAGTGTTCACCGAGAGACGACAGATaaag > 1:815439/1‑142 (MQ=14) cTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGGGTGTTCGCCGACACACCACCGATAAAAc > 1:449940/1‑143 (MQ=14) tttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACa > 1:245503/1‑143 (MQ=255) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGCCGACCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaaa < 1:358629/143‑1 (MQ=255) cGCTTGATTTGATGGCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaaa < 1:66844/143‑1 (MQ=255) cTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGGTCACCGACAAACAACAGCTAAAACAAACgg > 2:110876/1‑143 (MQ=255) tgacgtgatGCCTGGCAGTGTGTGCCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCGAATCCGCTCCCGTCGGATTTGTCCTACCCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGcc < 2:817715/138‑1 (MQ=11) gattggatGCGTGGGAGTTGATGCCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGccc < 2:460094/143‑1 (MQ=11) atttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCa < 1:426342/143‑1 (MQ=255) tgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCTGCCACCGTCCGGGCCGTCGCTTCGCACCGTGCAAATCCCCCCACGGCGGGCTTGTCCTACTCGAGAGAGCGCTCACCGAGACCCGCCAGCTAACACACAAGGCCCAggc > 2:577813/1‑141 (MQ=2) atGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCtt < 2:245503/143‑1 (MQ=255) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTc < 1:143555/143‑1 (MQ=255) tGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCACAGTGATCCGAc > 2:47861/1‑143 (MQ=255) gaGTTTATGGCGGGCGTCGTGCCTGCCACCCGCCGGGCCGTTGCTTCGCAACGTGCAAATCCGCTCCCGGCGGATTTGTCCTACGCGGGAGAGTGTTCACCTACAAACAACAGATAAAACACACGGCCCAGCCTTCCGACtta < 2:188317/142‑3 (MQ=11) tcaTGGCGGGCGTCCGGCCCGCCACTCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 1:221157/141‑1 (MQ=255) gcgggggGCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTGCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGt < 2:330354/143‑1 (MQ=255) gggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCCGTCTTCCGACTGAGCCtaatggtt > 2:683773/1‑136 (MQ=255) gTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 1:188699/143‑1 (MQ=255) gTCCCGCCCGCCGCACTCCGGGCCGTTGCTTCGCAACGTGCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTCCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 1:281932/143‑1 (MQ=14) tGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt > 2:62450/1‑143 (MQ=39) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATGCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg > 1:557232/1‑143 (MQ=255) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGCGCCTGTTGTTTTATTTGATGTCTg > 1:712688/1‑143 (MQ=255) cgaCCGTCCGGGCCGTTGCTGCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTCCTCGGGAGAGTGTTCACCGACAAGCAACATATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCGTTTGTTTTATTTGATGTCTgg < 2:154073/141‑1 (MQ=14) ccACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg > 1:257677/1‑143 (MQ=255) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 1:45177/1‑143 (MQ=255) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCACTCTTCCGACCGAGCCTTTTGTTTTATTTGATGTCTGGCa > 1:564436/1‑143 (MQ=255) ccGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACACACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc > 2:130916/1‑143 (MQ=255) ggCTGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTa < 1:509176/143‑1 (MQ=255) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAct < 2:226483/143‑1 (MQ=255) cGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActc < 1:639115/143‑1 (MQ=255) cTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCa < 1:233869/143‑1 (MQ=255) ttCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACCCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCAt < 2:460983/143‑1 (MQ=255) ttCGCAACGTTCAAATCCGCTCCCGACGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACACAAGGCCCAGTCTTCCGACTGAGCCTTGTGGTTTATTTGATGTCTGGCAGCGCTCTACTCTCACAt > 1:439766/1‑143 (MQ=14) aaCGTGCAAATCCGCTCCGGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGga < 2:159292/143‑1 (MQ=255) ttCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc > 1:14470/1‑143 (MQ=255) ttCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc > 1:720926/1‑143 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGCGAGTGTTCACCATTGAGCAACCGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCGTATGCCTACAAATGATGTCTGGCAGTTCCCTCCTCTCGCATGGGGAGAccc > 2:792711/1‑143 (MQ=14) tCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGAccc < 2:126965/143‑1 (MQ=255) ccGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCCGTCTTCCGACTGAGCCTTTTGTTTTATTTGAGGCCCGGCACTTCCCTCCTCTCGCCTGGGGACCCCCCCCACt > 2:743144/1‑143 (MQ=14) gCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTAc > 2:634101/1‑143 (MQ=255) cccGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACACACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCAt < 2:126951/143‑1 (MQ=255) ggATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGATCCATACACTCGCAAGGGGAGACACCACAATAACATCGgggc > 2:210244/1‑143 (MQ=14) gTCCTCCTCTGGTGAGCGTTCACCTACAAACAACAGATCAAACAAAAGGCCCAGTCTTCCGCCGTAGCCTTTGGTTTTAGTTGATGTCTCTCAGTTCCCTCCTCTCGCATTGGGAGGCCCCACACTACCATCGGCGCTACGGc < 2:469276/143‑1 (MQ=11) ccTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGt > 1:780884/1‑143 (MQ=255) tACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt < 1:47861/143‑1 (MQ=255) tACGCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACGACCATCGGCGCTACGGCGttt < 2:165505/143‑1 (MQ=255) aCTCGGGAGAGTGCTCACCGACAAACAACAGATAAACCAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTGGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTc < 1:814428/143‑1 (MQ=255) agagTGTTCACCGACAAACAACAGATAAAACGGAATGTTGAGTCGTTAGACTGAACCTTTTGTTTTATTTGCTGTCTGGCAGTTCCCTACTCTCGCCTGGGGCGACCCCACACCACCATCGGCGCTGCGGCGTTTCACTTCTg > 2:146890/1‑143 (MQ=11) gagTGTTCACCGACAAACAACGGATAAAACGTAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGa < 2:564436/143‑1 (MQ=255) gagTGTGCACCGACAAACAACAGATAAAACAAGAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACCCACGCATGGGGAGCCCCCACACTACCAGCGGCGCTACGGCGTTTCACTTCTGa < 2:842860/143‑1 (MQ=14) gagTGGTCACCGACAAACAACAGAGAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCGGGCAGTTCCCTGCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGa < 2:744690/143‑1 (MQ=255) ttCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCg < 2:257677/143‑1 (MQ=40) cGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATg > 1:60053/1‑143 (MQ=40) acaaacaaCATATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATggg < 2:271037/143‑1 (MQ=255) acaaacaaCAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTGCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATggg < 2:776284/143‑1 (MQ=255) caaacaaCAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATgggg < 2:147423/143‑1 (MQ=40) aacaacAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTc > 1:719392/1‑143 (MQ=255) aGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATAGCAGATACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTgg < 1:592625/143‑1 (MQ=255) aTAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATCGGCAGACCCCACACTACCATCGGCGCTTCTGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGTGa < 2:311049/143‑1 (MQ=14) | GATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGA > NC_000913/3423234‑3423518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |