Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 417,075 (TCATAAATCTG)2→1 intergenic (‑123/‑57) sbcD ← / → phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 417075 417085 11 49 [0] [0] 49 sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4170740 (0.000)47 (1.070) 42/260 0.1 100% intergenic (‑122/‑68) sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR
?NC_000913 417086 = 0 (0.000)intergenic (‑134/‑56) sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

GAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAA  >  NC_000913/416933‑417215
                                                                                                                                             |                                                                                                                                             
gAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGa                                                                                                                                              <  2:253436‑M1/143‑2 (MQ=255)
     gtgAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcat                                                                                                                                         >  2:131306‑M1/1‑137 (MQ=255)
       gAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCAATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATATGCGACGAGCTTTTCATAAATCTGacgcgtaa                                                                                                                                       >  2:282943‑M1/1‑135 (MQ=255)
       gAAGGATGCGCATAACGGTTCCCTGGCGAAAAAACATGGCCGCGATTATACCCAAACAGATGTGCAATTTGCTTTTTTCTGCGCCCCGGAAATCAATAACCTGAAGATATCTGCGACGAGCTGATCATAAATCTGccgaataa                                                                                                                                       >  2:240593‑M1/1‑135 (MQ=255)
        aaGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataac                                                                                                                                      >  1:621019‑M1/1‑134 (MQ=255)
           gATGCTCATAACGGTTTCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAAGCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgac                                                                                                                                   <  1:247330‑M1/143‑13 (MQ=255)
               cgcATAACGGTTCCCTGGCGAAGAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATGTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATACGTGCGACGAGATTTTCAGAAATCTGacgcataatgacgtgg                                                                                                                               >  2:536653‑M1/1‑127 (MQ=255)
                gcATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGGAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGgcgcataatgacgtcgc                                                                                                                              >  1:830615‑M1/1‑126 (MQ=255)
                gcATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgc                                                                                                                              <  2:451932‑M1/143‑18 (MQ=255)
                  aTAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcat                                                                                                                            >  2:193809‑M1/1‑124 (MQ=255)
                        gTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatga                                                                                                                      <  1:38226‑M1/143‑26 (MQ=255)
                         ttCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGTCTTTTGAAGGCAACTACGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgat                                                                                                                     <  1:196213‑M1/143‑27 (MQ=255)
                          ttcctgGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatc                                                                                                                    <  2:310367‑M1/141‑28 (MQ=255)
                          tCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatc                                                                                                                    <  1:625839‑M1/143‑28 (MQ=255)
                             cTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGCTGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGCAGCTATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtagcatcaatcatgtca                                                                                                                 >  2:555577‑M1/1‑113 (MQ=255)
                              tGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGCGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgaaa                                                                                                                >  1:233943‑M1/1‑112 (MQ=255)
                                gCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacc                                                                                                              <  2:845305‑M1/143‑34 (MQ=255)
                                 cGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgaacgcgacct                                                                                                             >  2:457230‑M1/1‑109 (MQ=255)
                                      aaGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctattta                                                                                                        <  2:591400‑M1/143‑40 (MQ=255)
                                             ggCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctagttattacaac                                                                                                 >  1:534779‑M1/1‑97 (MQ=255)
                                              gcgcgcTTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaaca                                                                                                <  1:805771‑M1/143‑48 (MQ=255)
                                              gcgcGATTATACCCAAACAGATGTGCCATTTGCTTTTTGCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaaca                                                                                                <  1:565480‑M1/143‑48 (MQ=255)
                                              gcgcGATTATACCCAAACAGATGTGCCATTTGCTTTTTGCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaaca                                                                                                >  2:561346‑M1/1‑96 (MQ=255)
                                                 cttttataCTCATACAGATGTTCCATTTGCTTTTTTCTGCGCCACGTAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTTacgtataatgacgtcgcattaatgatcgcaacctatttattacaacaggg                                                                                             <  2:34243‑M1/140‑51 (MQ=255)
                                                       taCCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatc                                                                                       <  1:170320‑M1/143‑57 (MQ=255)
                                                         cccAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcat                                                                                     <  1:452515‑M1/143‑59 (MQ=255)
                                                          ccAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatg                                                                                    <  1:650813‑M1/143‑60 (MQ=255)
                                                             aaCAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcg                                                                                 >  1:860771‑M1/1‑81 (MQ=255)
                                                             aaCAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGAGATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaccctatttcttacaaccgggcgaatcatggcg                                                                                 >  1:39700‑M1/1‑81 (MQ=255)
                                                                     tgCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtat                                                                         >  2:155647‑M1/1‑73 (MQ=255)
                                                                       ccATTTGCTTGTTTCTGCGCCACGGAAATCAATAACCTGAATATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattc                                                                       <  2:578681‑M1/143‑73 (MQ=255)
                                                                               ttttttCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaaccgatttattacaacagggcaaatcatggcgagacggcttctcggccga                                                               >  2:2483‑M1/1‑63 (MQ=255)
                                                                                               gAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaa                                               <  2:534779‑M1/143‑97 (MQ=255)
                                                                                                  aTCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattc                                            >  1:395587‑M1/1‑44 (MQ=255)
                                                                                                   tCACTAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacatcagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcg                                           <  1:384729‑M1/143‑101 (MQ=255)
                                                                                                   tCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcg                                           >  1:805127‑M1/1‑43 (MQ=255)
                                                                                                    cAATACCCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgc                                          <  1:334014‑M1/143‑102 (MQ=255)
                                                                                                     aaTAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgcg                                         >  2:658199‑M1/1‑41 (MQ=255)
                                                                                                      aTAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtagtagaagatgaagcaccaattcgcga                                        >  2:49681‑M1/1‑40 (MQ=255)
                                                                                                            tGAAGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgcgaaatggt                                  <  1:491608‑M1/143‑110 (MQ=255)
                                                                                                              aaGATATGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaatttgcgaaatggtct                                >  2:566798‑M1/1‑32 (MQ=255)
                                                                                                                  tatGTGCGACGAGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtggaagatgaagctccaattcgcgaaatggtctgctt                            <  2:474649‑M1/143‑116 (MQ=255)
                                                                                                                      tgCGACGAGCTTTTCGTCAAGCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaccagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgcgaaatggtctgcttcgtg                        <  1:595024‑M1/143‑120 (MQ=255)
                                                                                                                        cgacgaGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgcgaaatggtcggctccgtgct                      >  2:855504‑M1/1‑22 (MQ=255)
                                                                                                                         gacgaGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaactcatggcgagacgtattctggtcgtagaagatgaagatccaattcgcaaaatggtctgctgcgtgcac                     >  2:484603‑M1/1‑21 (MQ=255)
                                                                                                                         gacgaGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtgttctggtcgtagaagatgaagctccaattcacgaaataatctacttcgtgctc                     >  1:245005‑M1/1‑21 (MQ=255)
                                                                                                                          acgaGCTTTTCATAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctctaattcgcgaaatggtctgcttcgtggtcg                    >  1:761978‑M1/1‑20 (MQ=255)
                                                                                                                                      tAAATCTGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagaggtattcttgtcgtagaagatgaagctccaatgcgcgaaatggtctgcttcgtgctaggacaaaatggct        >  2:196089‑M1/1‑8 (MQ=255)
                                                                                                                                            tGacgcataatgacgtcgcattaatgatcgcaacctatttattacaacagggcaaatcatggcgagacgtattctggtcgtagaagatgaagctccaattcgcgaaatggtctgcttcgtgctcgaacaaaatggctttcagc  <  2:860771‑M1/143‑142 (MQ=255)
                                                                                                                                             |                                                                                                                                             
GAGGTGTGAAGGATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAA  >  NC_000913/416933‑417215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑