| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 845729 | NA (NA) | 4 (0.100) +GATTTTGCGTTTGTCATCAGACTT |
4/234 | 6.3 | NA | noncoding (99/99 nt) | RIP78 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP78 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470516 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCAGCCGCGAAGCTACTTTCTCGGCA > NC_000913/845589‑845870 | aaGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGTAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa < 1:447498/143‑1 (MQ=255) aGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:338382/143‑1 (MQ=255) gggATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtg < 1:602905/143‑1 (MQ=255) atTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTTATGCAATTTTAATAAGATACAAGATATACAATAGGCCTAATAAGCGTAGCGCATCAGGCAATGTGTCt > 1:801853/1‑143 (MQ=37) gaagaagGTTGCTGACAACGTGCGGGCGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCtta < 1:360541/142‑1 (MQ=255) ggTTGCTCACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAaga < 1:472480/143‑1 (MQ=255) ggTTGATGTCAATGTGCGGGCTTTTTTGCCGGATGCGGCGGGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAaga < 2:509998/143‑1 (MQ=255) gCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACg < 1:538658/143‑1 (MQ=255) gCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCGACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATGTCTTATTAAgagatc > 1:485530/1‑141 (MQ=255) tGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGCTATCCTGTAGGCCTGATAAGCGTAGAGAATCAGGCAATGTGTCGTAGTAAGCGACGtg > 2:211248/1‑143 (MQ=37) aCAACGTGTGGGCTTTTTTGCCGGATTCGGCGTGAACGAAACACACGGGCTGGTTGGTCATGCAATCTTTTTAATTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtgct < 1:174276/143‑1 (MQ=19) aCAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTACGAGACGtgct > 1:57769/1‑143 (MQ=255) caccGTGCGGGCTTGGTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtgctg < 1:825993/140‑1 (MQ=255) cAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGtgctg < 2:26465/143‑1 (MQ=255) cGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAACGTGTCTTATTAAGAGACGtaccgcca > 2:607577/1‑136 (MQ=255) tGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCaaaa < 1:861192/143‑1 (MQ=255) cGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAAt < 1:520826/143‑1 (MQ=255) cGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAAt < 2:554761/143‑1 (MQ=255) tttGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTCGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCaa < 1:349866/143‑1 (MQ=255) ttGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCCGTAGTCCTGATAAGCGCAGCGCAGCAGGCAAGCTGTCTTATTTAGCGACGTCCCGCAACAATGccgggcag > 2:68274/1‑137 (MQ=18) tGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGGTGCAAAAAGTCCTGCAAgc > 1:468312/1‑143 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAgcgc < 1:827148/143‑1 (MQ=255) cGGATCCGGCGTGAACGCCTTATCCGTACTACAAGTTCATGCAATTTTAATAAGTTGCCAGAGATCCTGCAGGCCTGATAAGAGTAACGCAACAAGCAATGTGTCTGACTAAGAGACGAGCTGCAAAAACTCCTGAAAacggt > 2:835422/1‑141 (MQ=25) cgTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATACGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTCTCTTGTTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTcggcg > 1:345757/1‑143 (MQ=255) tGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCggg < 1:711553/143‑1 (MQ=255) tGAACGCCTTAACCGTCCTACAAGTTCATGCAATTTTAAGAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCggg < 1:712227/143‑1 (MQ=255) cTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGCCACGGCGAGTTCTTGa > 2:800280/1‑143 (MQ=255) ttATCCGGCCGAGAAGTTCATGCAATTTTAATAAGTTGGCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGAt < 1:340321/143‑1 (MQ=255) ttACCCGGCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGAt < 1:308914/143‑1 (MQ=255) tATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATc < 2:430409/143‑1 (MQ=255) tcccGGCCTACAAGTTCATGCAATTTTAATAAGTTCCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCa < 2:473189/141‑1 (MQ=255) tCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAAATCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCaa < 2:331922/143‑1 (MQ=255) gTCCTACGAGTTCATGCAATTTTAATAGGTTGACAGAGATCCTGTAGGCCTGAGAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAacac < 2:294345/143‑1 (MQ=39) cgaGTGCATGCAATTTTAATAAGTGGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCgg < 2:578774/141‑1 (MQ=255) cAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATTCACACCTGCgg > 1:214666/1‑143 (MQ=255) ttCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTg < 2:821280/143‑1 (MQ=255) cgtGCAATTTTAATAGGTGGTCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGcc < 2:693226/141‑1 (MQ=255) aTGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAACGCATCAGGCAATGTGTCTTATTTCGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCCCGGCGGGTTCTTCATCAACCCCTGCGGATTGCCa > 2:702643/1‑143 (MQ=39) gCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATc < 2:508348/143‑1 (MQ=255) tttAATAAGTTGCCAGATTTCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCg < 2:752485/143‑1 (MQ=255) ccAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGGGCTGGCCCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCtt > 1:429504/1‑143 (MQ=255) gATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGt < 1:909206/143‑1 (MQ=255) gATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGt < 1:769331/143‑1 (MQ=255) tatCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCCTCTTCCGCAATCCGGCCTTTGTCg > 1:141643/1‑143 (MQ=255) tatCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCg > 1:182277/1‑143 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCACTGTGTCTTATTACGAGACGTGCTGCAAGAAGTCCTGCAAGCGCTGGCTCGGCGGGTTCGTGATCCACGCCTCCGCCCAGCCATCTTCCGCCAGCCGCCCCTTGTCGATag > 2:193157/1‑142 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCa < 1:286779/143‑1 (MQ=255) aGCGCATCAGGGAATGTGTCTTCTTAAGAGACGTGCTGCAAAAGTTCCTGCAAGCCCTGGCCCGGCTGGTTCGTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCAGCCGCGAAGCTAc < 2:279162/143‑1 (MQ=255) gcATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATGAGCCGAGAAGCTACttt > 2:682342/1‑143 (MQ=255) aTCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTCGCTCGACGGGTTCATGATCAACACCTGCGGATCGCCATCTTCCGCAATCCGGCCTTTGTCGATAACGATCAGCCGCCCAGCTACttccc > 2:466879/1‑140 (MQ=255) tCAGGCACTGGGGCGTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCAGCCGCGAAGCTACTTtctc < 1:654755/143‑1 (MQ=255) tCAGGCAATGTGTCCTATAAAGAGACGTGCTGCAAAGATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCTTCTTCCGCAGTCCGGCCTTTGTCGATAAAGATCAGCCGCGAAGCTACTTtctc < 1:91408/143‑1 (MQ=255) cAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAGAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGACCAACGCCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCAGCCGGGAAGCTACTTTCTCg < 2:786567/143‑1 (MQ=255) gCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGAGCAGCCGCCACGCTCCTTTCTCgggc > 2:806638/1‑141 (MQ=255) | AAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTTTAATAAGTTGCCAGATATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTGTCTTATTAAGAGACGTGCTGCAAAAATTCCTGCAAGCGCTGGCTCGGCGGGTTCTTGATCAACACCTGCGGATTGCCATCTTCCGCAATCCGGCCTTTGTCGATAAAGATCAGCCGCGAAGCTACTTTCTCGGCA > NC_000913/845589‑845870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |