| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1691425 = | NA (NA) | 4 (0.100) +GATTTTGCGTTTGTCATCAGACTT |
4/234 | 6.3 | NA | noncoding (1/97 nt) | RIP126 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP126 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470516 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGG > NC_000913/1691289‑1691560 | gaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt > 2:156439/1‑143 (MQ=255)gaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt < 1:586466/143‑1 (MQ=255) aagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTGTCACTCCGGCGTTTTCATCTGAAAACCAACCAGAGATTGCCTGagg > 2:556443/1‑141 (MQ=255) tttGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa < 2:253714/143‑1 (MQ=255) ttgttgGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:732897/1‑143 (MQ=255) gCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGCGATTGCCGGATGCGCTACGCTGAt > 2:508741/1‑143 (MQ=255) cATGTTTGCGATGCCAGCTCGTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCCGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc < 1:323288/143‑1 (MQ=255) aTGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGACTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa < 2:630019/143‑1 (MQ=255) cGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:685519/143‑1 (MQ=255) cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc > 1:812261/1‑143 (MQ=255) aGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACGCCGGCGTGTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTcc < 2:21244/143‑1 (MQ=255) tctTAACGTTCCGGCTGCACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGc < 1:435451/143‑1 (MQ=255) ctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTCCGCTTATCACGCCTACCTTTTCCTCCa > 2:199509/1‑143 (MQ=255) ttAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCac > 2:767289/1‑142 (MQ=255) ttAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCaa < 2:871258/143‑1 (MQ=255) ttAACGTTCCGGCTGTACCGGCAATTACGCAGCCTTTAGTCCCGGCCAAAACGCCGGAGAATTTTCACTCCGGCCTTTTCATCTGAAAACAAACCACAGATTGCCTGACGGCCCACCCTCAACCGGCCCACCTTCTCCTgaca > 2:513634/1‑140 (MQ=255) aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca < 2:28651/143‑1 (MQ=255) aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATGCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca < 1:685974/143‑1 (MQ=255) gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCCGGCCTACCCTTTCCTGCacgcctc > 2:923867/1‑137 (MQ=255) gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACtt < 1:89109/143‑1 (MQ=255) ttgcGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAGCGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACttt < 2:897442/140‑1 (MQ=255) cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAAttt < 2:671386/143‑1 (MQ=255) gTACCGGCAATTCCGCAGCACCAAAGCCCGGCCATAATTCGGGAGAATGTTCACTGCGGCGTTTTCATCTGAAACCAAACCAGAGATTGCCTGATGCGCTACGCTTATCCGGCCTACCTTTTCCTGCACCACTTCGCATTTAt > 2:914747/1‑143 (MQ=255) ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCCTCTGCAAACCAACCAGAGATTGCCTGATGCGCTACGCTTATCACGCCTCCCTCTTCCCGCAACCCTTCCAAtttcggagct > 2:357953/1‑136 (MQ=255) aTTGCGCAGCAGGAATTCACGGCCAAAGCGCCGGAGAATTGTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGTGCTACGCAGATCATGCCCACATTTTCCTGCGACACTTTGAATTTATGAGTTTTTg < 1:352837/143‑1 (MQ=255) ttCCGCAGGAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCTGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGt < 1:864479/143‑1 (MQ=255) gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGc > 1:731096/1‑143 (MQ=255) agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTg < 2:732615/143‑1 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGAt > 1:15877/1‑143 (MQ=255) tAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATac > 1:69334/1‑142 (MQ=255) aTTCACGGCCAAAACGCCGGAGACTTTTTTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAgg < 1:831277/143‑1 (MQ=255) aaaaCGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTAcgcc < 1:520194/143‑1 (MQ=255) ggAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTCTGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCgg < 2:216160/143‑1 (MQ=255) gagaATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCGTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTGGGCTGGATAAGGCGTTTACGCCGCATCCGGc > 1:476258/1‑143 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaa > 2:264115/1‑143 (MQ=255) ttttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaa > 2:331449/1‑143 (MQ=255) tgtcTCAGGCGGTTTCATCTGAAAGCAGGCCATGGGTTGCCTGGTGCGCTACGGTTGTCAGGCCTACCGTCTCCTGCAACACTGTGAATTGATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaaaaa < 2:779948/140‑1 (MQ=21) cGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGCTAAGGCGTTTACGCCGCATCCGGCATAACACACGCGCa > 2:695785/1‑143 (MQ=255) cGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCAGCATCCGGCATAAAAGACGCGCACtt > 2:859961/1‑143 (MQ=255) gctttCATCTGCAACCAACCCCGAGATTGCGTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACttt < 1:632587/141‑1 (MQ=37) cATCTGAACACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTcaa < 2:605727/143‑1 (MQ=255) tCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTcaaca > 2:126975/1‑143 (MQ=255) gAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACCTTGAATTTATGAGTTTTTGTAGGCTCGATAACGCCTACGCGTTGAATGCGGCATAAAAAACGCGCCCTTTGTCAGCAATc > 2:193115/1‑143 (MQ=25) aacaaacCAGGGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGa < 2:865059/143‑1 (MQ=255) aacaaacCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCGGa > 1:571322/1‑143 (MQ=255) caaacCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGaaa < 1:274667/143‑1 (MQ=255) agagATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACCCTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGCCAACAATCTGAAACGCCgg > 1:730220/1‑143 (MQ=255) | GAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGG > NC_000913/1691289‑1691560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |