| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3150695 | 54 (1.060) | 4 (0.100) +GATTTTGCGTTTGTCATCAGACTT |
4/234 | 6.3 | 8.2% | noncoding (142/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites |
| ? | NC_000913 | = 4470516 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCTTTGGCGGTTT > NC_000913/3150553‑3150837 | gCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGc < 1:890264/143‑1 (MQ=255)gCCCGGTTGGGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGc < 1:896710/143‑1 (MQ=255) ggTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:306365/1‑142 (MQ=255) gAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCAcc > 2:888217/1‑143 (MQ=255) aaaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCATCt > 1:874795/1‑143 (MQ=255) aaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTaa > 1:538105/1‑143 (MQ=255) ggcGGGCATCATGGTGAATCAGCTCTTGCATGATGTGGGTAAAACGGTTTATCTGGTTACATACGCATGAAGATTCAAGATGTTGCAATATATGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCATGGAGCACCTAATGCCg < 2:385220/141‑1 (MQ=255) cGGGCATCATTGTGAATTCACTCTTACCTGAGGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGa < 1:152779/143‑1 (MQ=255) tcatTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATggggc > 2:886474/1‑139 (MQ=255) gtgAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGaa > 1:560631/1‑143 (MQ=255) tgAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAAc > 1:738127/1‑143 (MQ=255) ttCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCCATAGATTTTGTAGGTCTGATAAGCGTCGCGTATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCt > 1:375345/1‑143 (MQ=255) ctctTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATc < 1:244886/143‑1 (MQ=255) tACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGc < 2:584131/143‑1 (MQ=255) aCCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATGCGGcc > 1:620433/1‑143 (MQ=255) cTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTTGGACTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGGTGCCTCGTCAACGGCCTATCGGGCCTa > 2:662992/1‑143 (MQ=21) cgtcgCGAAAACGCCGTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACaaa < 2:269078/139‑1 (MQ=255) tgGCGAAAACGGCTTATCCGCCTGCAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCCTTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACg < 2:89869/143‑1 (MQ=255) gCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGAGCATCAGGCATTTAGCAGCTAATGCCGGATGCGTCGTGTACGCCTTATCCGGCCTACAACCGCa > 2:752672/1‑143 (MQ=25) cGAAAACGACTTATCCGCCTATAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCAc < 2:97623/143‑1 (MQ=255) ccTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTc < 1:192729/143‑1 (MQ=255) ccTAATCCGCATACAAACGCATGAAGACTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTc < 1:364397/143‑1 (MQ=255) ctATCCGCCTACAAACGCATGAAGGTTCAACATGGTGCAATAGAGTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCaa < 1:768825/142‑1 (MQ=255) aTCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCGGTATGAGTCGTGAACGCCTTATCCGACCTAGCATCCCACAAAGAGTCacga > 2:55867/1‑140 (MQ=21) ccGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGAtt < 1:317485/136‑1 (MQ=255) ccGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGAtt > 2:317485/1‑136 (MQ=255) ccGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGCCCTGATAAGCGTAGCGCATCAGGCATTGCTCACCTCCTGCCGCCTGCCTCGTGAACCCCTTACCCGCCCCGCCAACGCACGACGCTCCAACacc > 2:353599/1‑141 (MQ=17) ccTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTg < 2:141870/143‑1 (MQ=255) aCGGATGAAGATTCAACATTGTGCAATAGATTTTGTAGGTCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTTAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGa < 2:341835/143‑1 (MQ=38) cGCATGAAGATTCAACATGTCGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAt < 1:815409/143‑1 (MQ=255) gCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAtt < 1:503029/143‑1 (MQ=255) ctccacaTTCAACATCTTGCAATAGATTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGCGACCGCCTTCTCAGGACCACAAACGCCCGACGATTCAACATGTTGCAATAGAtttt < 1:936168/137‑1 (MQ=25) gAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGCGAACCTACTTCCGGATGCGGCGTGCACGCCTTATCCCACCTACAGACGCATGACGATTCGACCTGTTGCAATCGCTTTTGt > 2:843952/1‑143 (MQ=18) gAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTCCCAACGCACGAAGATTCAACATGTTACGATAGCTTTTGt > 1:708492/1‑143 (MQ=37) gAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGCAGATTCAACATGTGGCAATAGAtttgtt > 1:322673/1‑140 (MQ=255) aGATTCAACATGTTGCAATAGATTGTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAg < 1:232157/143‑1 (MQ=255) ttCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACCTGTGCAAATACATTTTGTAGGcc > 2:844952/1‑143 (MQ=37) cAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGACGATTCCACATGTTGCAATAGATTCTGTAGGCCtc > 2:126541/1‑142 (MQ=255) ccATGTGGTAATAGATTTGCTTGGCCTGATAAGCGGAGCGCATCAGGCATTGATCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCtgat < 2:362794/142‑1 (MQ=25) cATGGTGCAATAGATTGTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCtgatg < 1:45179/143‑1 (MQ=255) aTGTGGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGCGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCtgatga < 1:440860/143‑1 (MQ=255) gCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTa > 1:800829/1‑143 (MQ=255) cAATAGATTTCCTCCTCCTGCCAAGCGTAGCTCATCAGGCTTTGAGCACCTACTCACAAATCCTTCGTTAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAg < 2:558445/143‑1 (MQ=17) tAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAgcgc > 1:326864/1‑143 (MQ=255) ttttGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATGCAACATGTTGCAATAGATTTTGTCGGCCTGATGAGCGGAGCGCATCa > 2:728319/1‑143 (MQ=255) ttGATAAGCGTAGCTTATCAGGTATTGAGCACCTGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCta < 1:313757/142‑1 (MQ=21) aTAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGCGCGGAGCGCATCAGGCAATTCtacct > 2:290435/1‑141 (MQ=255) aaGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCtacttta > 1:15127/1‑143 (MQ=255) cGTAGCGCATCAGGCATTGAGCACATCAAGCCGAATAAAGCGGGAAGGCCTTATCCGGCCTACAAAGTAACAAAGATTCAACAATATTCTAGAGAGTGTGGAATCCTGATGAGCACAGCGCAGGAGGCAGTTCtactttactt > 2:708135/1‑143 (MQ=255) gcgcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAGGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCt > 2:96029/1‑143 (MQ=255) cgcATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCtt > 1:488158/1‑143 (MQ=255) ccgcAGGCATTGAGCAGCCAATGCCGGAAGCAATGGTAACCCCTTATCCCGTCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCTTTg < 2:229758/140‑1 (MQ=18) cATCCGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCTTTg < 2:528649/143‑1 (MQ=255) cATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTCATGAGCGTAGCGCATCAGGCAATTCTACTTTACATCGCTTTg > 1:677796/1‑143 (MQ=255) gCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTCCTTCGCTTTGGCGGtt > 1:356682/1‑143 (MQ=255) cATTGAGCACCTAATGCCGGATACGTCGTCAACGCCTTATCCGGCCTACAAACGCACGACGATTCAACATGTTGCACTAGATTTTGTAGGCCTGCTGAGCGCAGCGCATCAGGCAATTCTACTTTCCTTCGCGTTCGcctctt > 1:318006/1‑138 (MQ=25) | GCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACTTTACTTCGCTTTGGCGGTTT > NC_000913/3150553‑3150837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |