New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423665 =	NA (NA)	14 (0.280)	11/278	4.2	19.4%	intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA of rrnD operon
	?	NC_000913	= 4171803	59 (1.160)					intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATC  >  NC_000913/3423525‑3423801                                                                                                                                             |                                                                                                                                         cgcTACGGCCGCCAGACAAATTCTTTTCTAATCTGCCGGACTTTAGCCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGTGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTg                                                                                                                                        <  2:597523/143‑1 (MQ=255)  tcTACTGCCGCCAGGCAAATTGTTTTCTACTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCACAGTCGAACTGGGGACCTCACCCTTACCATGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGa                                                                                                                                       <  2:919683/142‑1 (MQ=37)     aCTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGc                                                                                                                                    <  2:922600/143‑1 (MQ=255)       cgccgccATACAAATTCTGTCCTAAGCTGCCGAACTTTACCCGAACAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCCCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCt                                                                                                                                  <  2:580463/142‑1 (MQ=25)           gccAGACAACTTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACCGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCa                                                                                                                              <  1:802868/143‑1 (MQ=255)           gccAGACAAATGCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCa                                                                                                                              <  2:892505/143‑1 (MQ=255)              aGACAAACTCTTTCCTAATCTGCCGAACTTTCACCTAAAAAGCGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGtt                                                                                                                           <  1:21164/143‑1 (MQ=255)                aCAAATTCTTGTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACACAGAGTCGAACTGGGGACCTCACCCTTCCCAAGGGTGGGCTCTACTAACTGAGCCATATCACCACCCCGACCGTGATGCCTGCCAGTccc                                                                                                                         >  2:240608/1‑143 (MQ=255)                  agttctttttCTATTC‑GCGGATCTTTAACCCACAGAGTGGTGCTGATACCTAGAGTCGAACTGGGGACTTCACCCTTACCAAGGGTGCGCTCTACCATCTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTa                                                                                                                      <  2:163980/137‑1 (MQ=21)                           tCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGCACCCGACTCGCGCa                                                                                                              >  2:41687/1‑143 (MQ=255)                             tAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATg                                                                                                            <  1:745170/143‑1 (MQ=255)                               aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAGTTTGATGCCTGGCAGTTCCCGACACTCGCATggg                                                                                                          >  1:792972/1‑143 (MQ=255)                                tccgCCGAACCTCAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgggg                                                                                                         <  1:272019/140‑1 (MQ=255)                                          tttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca                                                                                               >  1:801134/1‑143 (MQ=255)                                            tAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACt                                                                                             <  1:752546/143‑1 (MQ=255)                                                 tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGACCGGCAGTTCTCTTTTCTCGCATGGGGAGACCCCACACTACCAt                                                                                        <  1:889132/143‑1 (MQ=37)                                                 tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATCTGATGCCTGGCAGTTCCCTCCTCTCGCCTGCGGAGCCCCCACACCACCAt                                                                                        >  1:318411/1‑143 (MQ=25)                                                  aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCAGGCTACACTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATc                                                                                       >  1:781141/1‑143 (MQ=255)                                                   aaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGAGGAGACCCCACACTACCATCg                                                                                      >  1:597363/1‑143 (MQ=255)                                                                         gTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCCGCGCTACGGCGTCTCACTCCTg                                                                >  2:361264/1‑143 (MQ=255)                                                                           cGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAg                                                              >  1:117636/1‑143 (MQ=255)                                                                           cGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCGAAATTTGATGCCTGGCAGTTCCGTACTCTCGCATGGGGAGACCCCACACTACGATCGGCGCTACGGCGGTTCCCGTCTGAg                                                              >  1:12653/1‑143 (MQ=25)                                                                             aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGCTGCCTGGCAGTTCCCTACTCTCGCATGGGGAGGCCCCACACTACCATCGGCGCTACGGCGTGTCACTTcgccgac                                                            >  2:834128/1‑137 (MQ=25)                                                                                       cgcACCCTTGGTAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATCGGGAGACCCCACACTACCATCCACGCTACGGCGTTGCACTTACAAGTCCGGCATgggg                                                  >  2:670314/3‑143 (MQ=18)                                                                                          aCCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCa                                               >  2:165894/1‑143 (MQ=255)                                                                                          aCCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTCCACCGCTGAGTGCGGCATGGGGCCa                                               >  2:225586/1‑143 (MQ=21)                                                                                           cccTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCAc                                                                     >  2:448826/1‑120 (MQ=255)                                                                                           cccTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCAc                                                                     <  1:448826/120‑1 (MQ=255)                                                                                            ccTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATggggcccgg                                             >  2:712641/1‑138 (MQ=255)                                                                                                               tACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGAAGACCCCACACTACCATTGGCGCTACGGCGCTTCACTTCTGAGTTCGGCCTGGGGTCAGGTGGGACCCCCGCGCTACgg                          >  1:214167/1‑143 (MQ=17)                                                                                                                  cAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGCCCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgccg                       >  1:799218/1‑143 (MQ=255)                                                                                                                          ccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaa               >  1:785422/1‑143 (MQ=255)                                                                                                                          ccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaa               >  1:621782/1‑143 (MQ=255)                                                                                                                           cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACACTCGCATGGGGAGAACCCACACTACCATCGGCGCTACGGCGTTGCACTTCTGAATTCGGCATGGGGTCAGGTGGGACGACAGCGCCACGGCCACCAGGCcaa              >  2:101672/1‑143 (MQ=14)                                                                                                                                cAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGCCGCTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCGAATTCTg         >  2:450211/1‑143 (MQ=255)                                                                                                                                  gCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGCCCGCCAGGCCAACTCTGtt       >  2:5939/1‑143 (MQ=255)                                                                                                                                       cTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGACAGGCAAATTCTGTTTTATc  >  1:663515/1‑143 (MQ=17)                                                                                                                                             |                                                                                                                                         CGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATC  >  NC_000913/3423525‑3423801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.