New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3727556	105 (0.940)	6 (0.060)	4/486	NT	7.2%	coding (192/342 nt)	yiaB	YiaAB family inner membrane protein
	?	NC_000913	= 3727755	52 (0.480)					intergenic (‑8/+161)	yiaB/xylB	YiaAB family inner membrane protein/xylulokinase

ACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3727276‑3727556 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatatggAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATGATTTTTTTACCCATATCTGCCAGTTAGTTGCGTTAATCACTATCGGTCTCTTGTTTATCGGTGTTTTAAACGCACCTATCAA  <  NC_000913/3727755‑3727485                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAG                                                                                                                                                                                                                                                                                       >  1:201164/1‑275 ACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATAACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAG                                                                                                                                                                                                                                                                                       >  1:88427/1‑275   AGATAGGGAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGAT                                                                                                                                                                                                                                                                                     <  1:745256/275‑1      TAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATG                                                                                                                                                                                                                                                                                  >  2:3865/1‑275      TAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATAT                                                                                                                                                                                                                                                                                   >  1:375044/1‑274                    ACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGCAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGAAATGGAGATCGTTA                                                                                                                                                                                                                                                                        >  1:446111/1‑271                                                                            TGTTGTCCATCACAGTATTCCTCTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGACATCGTTCTGCAAACCTCAAAGACTGTGGAAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCT                                                                                                                                                                                                              >  1:696691/1‑273                                                                                                                          TTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTT                                                                                                                                                              >  1:707394/1‑275                                                                                                                                                                                                    CCATTTCATAAGTATTTATAGGTGAGTTTAAAACACCGATAAAAAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGAGGTCGTTATGAAACCCGCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATG                                                                                    <  2:696691/275‑1                                                                                                                                                                                                    CCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATG                                                                                    <  2:707394/275‑1                                                                                                                                                                                                     cattgacTAAGAATTGAGAGGGGCGTTTAAAACACCGATAAACAAGAGACCGATAGGGATTAACGCAACTAACTGGCAGATATGGAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATG                                                                                    <  2:446111/267‑1                                                                                                                                                                                                                                                                                  AGATATGGAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAAATATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATGATTTTTTTACCCATATCTGCCAGTTAGTTGCGTTAATCACTATCGGTCTCTTGTTTATCGGTGTTTTAAACGCACCTA      >  1:805557/1‑275                                                                                                                                                                                                                                                                                      ATGGGGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCTGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATGATTTTTTTACCCATATCTGCCAGTTAGTTGCGTTAATCACTATCGGTCTCTTGTTTATCGGTGTTTTAAACGCACCTATCAA  <  1:313388/275‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3727276‑3727556 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatatggAGATCGTTATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATGCCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAACTATGCATATCTTCGCGCAGAAAAACTCGGGCAACTGGATGATTTTTTTACCCATATCTGCCAGTTAGTTGCGTTAATCACTATCGGTCTCTTGTTTATCGGTGTTTTAAACGCACCTATCAA  <  NC_000913/3727755‑3727485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.