| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,707,558 | Δ1 bp | coding (242/480 nt) | rseC ← | SoxR iron‑sulfur cluster reduction factor component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,707,556 | 0 | A | . | 96.4% | 232.2 / ‑0.3 | 56 | coding (244/480 nt) | rseC | SoxR iron‑sulfur cluster reduction factor component |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (25/29); minor base C (1/1); total (26/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CAAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTA > NC_000913/2707415‑2707692 | caAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATGTaa > 2:83004/1‑143 (MQ=255)caAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACAAGCGAGAACCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGAGATGAGGCGTAATCCCACCAGCGGCGACATATaa > 1:1094295/1‑143 (MQ=255) cTTCCGCGAGTAGCCGCCCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATaaccag < 1:621734/143‑5 (MQ=255) aCGCGCGTGGCCGCCAGCACTCCGGATGCCGCACATAACACCGAGGATCGCTCCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTaa < 1:786247/143‑1 (MQ=255) cgcgcgCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAGGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTaa > 2:353894/1‑143 (MQ=255) gcgcgcAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCACAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCCGTAATACGGAACTAAg > 1:509954/1‑143 (MQ=255) aaTCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCt < 2:792549/143‑1 (MQ=255) aGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCCGAAGCGAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACAAATAATAAAGAGAAAAGCAGGCTACCt > 2:735357/1‑143 (MQ=255) aGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCCGCGACGTCAGAAGCAAAGACCACCTGAAATAGCGAACCGACAAGGAATAATCACACCAGCGGCGACA‑AACAACCAGCAATGCAGACCTAAgacgcccgcct > 1:34280/1‑133 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGcc > 2:730315/1‑142 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCg > 2:1088449/1‑143 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCg < 2:843153/143‑1 (MQ=255) ccAATACCACCGAGGATCGCACCACATAATGCTTCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATc < 2:1098150/143‑1 (MQ=255) ccAATACCACCGAGGATCGCACCACATAATGCCGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATc < 2:556672/143‑1 (MQ=255) caaacccccCAGGTTCGCGCCGCATAATGCGGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAACAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATccc < 1:163331/140‑1 (MQ=255) caccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAtt > 1:439445/1‑143 (MQ=255) caccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAtt > 2:191324/1‑143 (MQ=255) aGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACt < 1:356843/143‑1 (MQ=255) ggATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACtt < 2:71382/143‑1 (MQ=255) aTCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCCGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACtttt < 1:451415/143‑1 (MQ=255) tCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACttttt < 2:717036/143‑1 (MQ=255) caccacATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCCCTTTTTGcc > 2:471172/1‑143 (MQ=255) aaTGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACt > 1:1009509/1‑143 (MQ=255) gACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCtc < 1:470532/143‑1 (MQ=255) aGAAGCAAAGAGTAGCTGAAGTAGCGAAGCGAGAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCCCATcaca > 1:582116/1‑143 (MQ=255) aGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATcaca < 2:923095/143‑1 (MQ=255) aaGCAAAGAGGAGGTGAAATAGCGAAGCGATAAGGAATAAGCGCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAgg < 1:69870/143‑1 (MQ=255) aGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCACCACAggg > 1:209586/1‑143 (MQ=255) gCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAGTGCGGAGCTAAGCAGGCTGCCTTCGGCGATACCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGt > 1:247346/1‑143 (MQ=255) cAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGtc > 2:876141/1‑142 (MQ=255) cAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTa < 2:264687/143‑1 (MQ=255) aaaGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCACTTCCACTTTTTGCCCCGCACCTAACGGCTCATCACAAGGtcc > 1:459928/1‑141 (MQ=255) aaaGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTAc > 2:1039799/1‑143 (MQ=255) tAGCCGAAATACCGAAGCGATAAGGAATAATCCCACCAGCGGCGAGATAT‑AACCAGTAATGCGGAGCTAAGTAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAAt < 2:700686/143‑1 (MQ=255) aGCTGAGATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATg < 2:3303/143‑1 (MQ=255) gcggAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATgg < 2:1094295/140‑1 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATACTCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAGGCAGGCTGCCTTCGGCGATCCCCAATGCCCCGTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGt < 1:149839/143‑1 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑ACCCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGGTCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTCCGACACTGGt > 2:699002/1‑143 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCAGAGGGTCCGACAATgga > 1:589622/1‑142 (MQ=255) tGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACCACAATGGTa > 1:695107/1‑143 (MQ=255) gAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTAt > 1:1105138/1‑143 (MQ=255) gAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTAt < 2:873299/143‑1 (MQ=255) aaaTAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGAGCACGACAATGGTATg > 1:32892/1‑143 (MQ=255) agcgaagcgaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTg < 2:488866/143‑1 (MQ=255) gaagcgaGAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGtt < 2:732518/143‑1 (MQ=255) gccatgaGGAATACTCCCACCCGCGGCGCCATAT‑AGCCAGTAATGCGGAGCGAAGCAGGCTGCCTTCGGTGATCCCCAATGCCACTTTTTGCCCCGGCACGAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGc < 1:476326/137‑1 (MQ=255) gacaaGGAACACTCCCACCCGCGGCGACATAT‑AACCAGGAATGCGGAGCTCAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg < 2:82850/140‑1 (MQ=255) gaTAAGGACTACTCCCACCAGCGGCGACATA‑CAACCAGCACGGCGGAGCTAAGCAGGCTGCCTTCGCCGATCCCCAGTTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg < 2:82335/143‑1 (MQ=255) aaGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCAGAGGGGACGAGAAGGGTATGCGTAGTATGAGGGcc > 2:851349/1‑143 (MQ=255) aaGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGcc < 2:1009509/143‑1 (MQ=255) aGGAATAATCCCACCAGCGGCGACAGAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATGCCACTTTTTGCCCCGGCACTAACGGCGCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGGCa > 2:18088/1‑143 (MQ=255) gAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGAGGAGCTAAGCAGACTGCCTTCGGCGATCCCCAATTCCAAAATGCGGTCCGTCACTAACGGCGCGTCAGAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAg > 2:413620/1‑143 (MQ=255) tacccccACCCGCGTCGACATAT‑CACCCGTAATGCGGAGCTATTCAGGCTGCCTTCGGCGATCCCCCCTTCCACTTGTTGCCCCCGCACTAACCGCTCATCACCGGGTACGACACTGGTATCCGTGGTTTGCGGGCCAAGttt < 1:876767/139‑1 (MQ=255) ggagcccACCGGCGGCGAGATAT‑AACCAGTAGTGCGGGGCTAAGCAGGCTGCCTTCGGCGCTCCCCAATTCCGCTTTTTGCCGCGGCAGTAGCGGCTCATGACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGttt < 1:482796/139‑1 (MQ=255) tCCCACCGGCGGCGACATAT‑AACCACTAACGCGCAGCTAAACACGCCTCCACCAGCGATCCCCAATACCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGtttatt < 1:730315/143‑1 (MQ=255) tCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGtttatt < 2:631396/143‑1 (MQ=255) tCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCACCACAGGGTACGCCAACGGTATGCGTGGCTTGCGGGCCAAGtctctc > 1:954883/1‑138 (MQ=255) ggcgACATAT‑AACCCGTAATGCGAAGCTAAGCATGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCTGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCgg < 2:509954/143‑1 (MQ=255) gACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTa > 2:796412/1‑143 (MQ=255) | CAAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTA > NC_000913/2707415‑2707692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |