New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 381681 = | NA (NA) | 7 (0.120) | 4/266 | 8.8 | NA | coding (331/366 nt) coding (8/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
? | NC_000913 | 381753 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||
Rejected: Coverage evenness skew score above cutoff. |
AGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381831‑381681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcgcAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCT > NC_000913/381753‑381894 AGCACCTCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAAAAACGCACGCTACAGTTGGTGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGC < 2:469393/143‑1 AGCACATCCGTATCTTCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGC < 2:1020942/143‑1 GCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCG > 2:533946/1‑143 GCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCCGAGAATGACGTGCAACTGCGCACGCGACACCCGGACACAACGGCCGACTAAGCTTACTCCCCATCCCCGGCCACTCAGGGCG > 1:447350/1‑143 cccactCGTGTCGTCACTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGC < 1:922909/137‑1 CACATCCGTATCATCAGTGTGACGACTGCGGCGGCCCACCATCCAGAAATCGGTTCGTCTGAGAATGACGCGCAACCGCGCACGCCACACCCGGATACAACGGCTGACCAAGCGTACTCCCCACCCCCCGGCCACAAGGGCGC > 1:740597/1‑143 CACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCAGCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGC < 1:505578/143‑1 CACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCACCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGC < 2:128787/143‑1 ACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACCCCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAGTAGGGGCGCG > 2:232293/1‑143 ACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACCACGGCTGGCTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCG > 1:283116/1‑143 CATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACGACGGCTGACTAAGCTTACTCCCCATCCCCGGGCACTCAGGGCGCGc > 1:813758/1‑142 CATCCGGATCATCAGCGGGACGTCTGCGGCTGTCATCCGTCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGT < 1:257697/143‑1 ATCCGTATCATTAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACCCCCCATCCCCCGGCAATAACGGCGCGgg > 1:263876/1‑141 ATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTCAGCTTACTCCCCATCCCCGGGCACTAGGGGCGCGTG > 1:538538/1‑143 ATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTG > 2:862051/1‑143 ATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACCAAGCTTACTCCCCATCCCCGGGCCATAAGGGCGCGcg > 1:649353/1‑141 ATCCGTACCACCAGTGTGACGACTGCGGCGGCCATCCATCCAGCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTG < 1:214612/143‑1 TCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACTACGGCTGACTAAGCTTACTTCCCATCCCCGAACAATAAGAGAGCGTac > 2:296527/1‑141 TCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACACTGGCTGCACAAGCCTAGACCCCCTCCCCGGGCAATAAGGGCGCTTGC > 1:491133/1‑143 ccgtagacTCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCG < 2:426055/135‑1 CCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGAAAACGGCTGACTAAGCTTACGCCCCATCCCCGGGCACTAGGGGCGCGTGCG > 2:890911/1‑143 ctTATCATCAGTGTGCCGACTGCGGCGGCCCTCCCTCCAGTCCTCGGTTCGTCTGAGAACGACGCGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGC < 2:1039402/141‑1 CGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGTGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGC > 2:372585/1‑143 ATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACCGCTCACTAAGCTTACTCCCTCTGGCCTGCCAATAAGGGCGCGTGCGCcat > 2:996844/1‑140 TCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTACAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCCAGCGCcatc > 1:214863/1‑139 ATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCAGTTCGTCGGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAACAAGGGCGCGcaccctattca > 1:254181/1‑132 TCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGGACTAAGGGGGCGTGAGCAatgcct > 1:658164/1‑137 CAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGCCACCCGGAGGCAACGGCTGACTAGGGTTACGCCCAATCGCCGGGCACTAAGGGCGCGTGCcgtcgccact > 1:262120/1‑133 CGCACGCGACACCGGGAGACGACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCAGGTGCACGTCATTCTCAGACGAACCGATGACTGGATGGACGGCCGCCGCAGTCGTCCCACTGATGAGACGG > 1:83182/1‑143 GCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACCGGAGGGATGGCCGCCGCAGTCGTCACACTGCTGATACGGA > 2:1041866/1‑143 ctgtgtttcgtGTGCTCACTTTCACTTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCTTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATC < 2:538461/132‑1 gttGCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCG < 1:967484/140‑1 gtGGCGCGTGTGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCG < 2:174396/141‑1 gacGCGCGTGCGCAGCTGTACGTCATTCTCAGACGAAGCGATGACTGGATGGATGGCCGCCGCAGTCGTCCCACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCG < 1:603820/140‑1 tgcCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTCCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGG < 2:918805/140‑1 tGGCGCGGGCGCAGTTGCACGTCATGCTGAGACGAACCGATGGCTGGAGGGGTGGCCGCCGCAGTCGTCACACTGATGATACGGGTGTGCTTCGCCGGATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGG < 1:1052376/142‑1 CGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTA < 2:1092250/143‑1 GCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTAT > 2:220726/1‑143 GCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTAT > 2:571213/1‑143 GCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGACGGCCGCCGCATTCGTCCCACTGATGATACGGATGTGCATCTCAGTATACACCATGTTATCGCAGACCTGCCAACTTATGCTTATCGTCGGATAT > 2:357665/1‑143 CGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCACCGTATGGTTATCGTCGGGTATG > 2:256337/1‑143 CGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATG > 2:1122315/1‑143 CGTGCGCAGTGGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATG < 2:945206/143‑1 GTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG < 2:343057/143‑1 GTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG < 2:620792/143‑1 GTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGAGGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTGCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG < 1:393016/143‑1 GTGCCCAGTTGCACCTCATTCTCAGACCAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG < 2:385442/143‑1 cGCGCAGCTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGG < 2:526232/142‑1 TGCGCAGTTGCACGTCATTCTCAGACGACCCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGAGACGGATGTGCTGCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGG < 2:865874/143‑1 TGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGG > 2:761006/1‑143 GCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATATTATCGGAAAGCTGCCAACGAATGGTTACCGGCGGcaaaggga > 1:8660/1‑135 CGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTGTGGGCG > 2:89980/1‑143 GCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGC < 2:469698/143‑1 GCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCCGGTATGGGCGC > 1:990352/1‑143 GCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCAGCAGTGGTCACACTGATGATTCAGAATTGCTTCTCCGTATACACCATGTTATCAGAGAGCTGCCAACGTATGGTTATCGTTGGGTCTCGGCGC > 1:133461/1‑143 CAGTTGCCCGTCATTCTCAGACGAACCGCGGACTGCCTGGATCGCCGCCGCAGTCGTCACACTGATGACACGGATGTGCTTCTCCGTCTACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCT < 2:491355/143‑1 CAGTTGCACGTCATTCTCAGACGCACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCAGGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCT < 2:729180/143‑1 AGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381831‑381681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcgcAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCT > NC_000913/381753‑381894 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |