Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 71 [0] [0] 71 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)66 (1.110) 52/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

TGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCT  >  NC_000913/3815721‑3815998
                                                                                                                                        |                                                                                                                                             
tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                         <  1:637547‑M1/143‑7 (MQ=255)
   ttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                      <  2:159533‑M1/143‑10 (MQ=255)
       tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcact                                                                                                                                  >  1:841954‑M1/1‑130 (MQ=255)
        aaGCGGAAGTTCGACACACTGTCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                 <  1:596557‑M1/143‑15 (MQ=255)
        aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                 <  1:51732‑M1/143‑15 (MQ=255)
          gcgcAAATTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCCCCGCATCTTACTTTTCTACAGAGAAAAAAGAGGGGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                               <  1:674404‑M1/143‑17 (MQ=255)
             cAAATTCAATAAACTTGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatg                                                                                                                            <  1:754202‑M1/143‑20 (MQ=255)
             cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatg                                                                                                                            >  1:1003593‑M1/1‑124 (MQ=255)
               aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgct                                                                                                                          >  2:817099‑M1/1‑122 (MQ=255)
                 ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcacttcaatgatgc                                                                                                                        >  2:460498‑M1/1‑120 (MQ=255)
                   cAATAATCTTGCGCTGATATTGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACACAAAAAAGGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                      <  1:345597‑M1/143‑26 (MQ=255)
                     aTAAACTGGCGCTGAGATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                    <  2:943475‑M1/143‑28 (MQ=255)
                            ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCAACTCCTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                             <  2:702239‑M1/143‑35 (MQ=255)
                            ggCGCTGATATGGTGGCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                             <  1:105714‑M1/143‑35 (MQ=255)
                                       ggTTTCATGCCTTCGGTCCTCGACTTACGTTTCTAGAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                                                                  <  2:1089594‑M1/143‑46 (MQ=255)
                                         tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGGCAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGAGCCGCCTTCTGCcgtcccctgcacttcaatcaggcgcccctcttcggtcaccactaagc                                                                                                >  1:41361‑M1/1‑96 (MQ=255)
                                         tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcccccctcttcggtcatcactacgt                                                                                                >  2:367624‑M1/1‑96 (MQ=255)
                                          ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgtt                                                                                               >  2:362469‑M1/1‑95 (MQ=255)
                                           tcgggccttCGCTCCTCCTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                              <  1:1068655‑M1/139‑50 (MQ=255)
                                              tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcctt                                                                                           >  2:1049291‑M1/1‑91 (MQ=255)
                                                     gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGGCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttgatggaggtct                                                                                    >  1:894712‑M1/1‑84 (MQ=255)
                                                          tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg                                                                               >  2:325409‑M1/1‑79 (MQ=255)
                                                               ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTACTGCcgtcccctgcacttcaatgatacgcccgtcttcggtcatcactacgttcatgtcggtccctccgaccga                                                                          >  2:34938‑M1/1‑74 (MQ=255)
                                                                  cTTTCCTACAGACAAAAGAGAGGCGACTCATCAGTCGCCTTAAAGATCAGCTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                                                                       <  2:1009795‑M1/143‑73 (MQ=255)
                                                                   ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGACAGCGCCGCCTTCTGCcgtaccctgcacttcaatgatgcgcacgtcttcggtcatcactacgttcatgtcggtctctgcggcagagact                                                                      >  1:566360‑M1/1‑70 (MQ=255)
                                                                       cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                  <  1:89808‑M1/143‑78 (MQ=255)
                                                                        tcccgccaaaacaAAGGCGACGCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                 <  2:172460‑M1/137‑79 (MQ=255)
                                                                        tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                 <  2:660426‑M1/143‑79 (MQ=255)
                                                                           aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgta                                                              <  1:139057‑M1/143‑82 (MQ=255)
                                                                           aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgta                                                              <  2:1099910‑M1/143‑82 (MQ=255)
                                                                           aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggaagagccttcaacgta                                                              >  1:694688‑M1/1‑62 (MQ=255)
                                                                           aGACAAAAAAAAGGCGACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                     <  1:735044‑M1/136‑75 (MQ=255)
                                                                           aGACAAAAAAAAGGCGACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                     >  2:735044‑M1/1‑62 (MQ=255)
                                                                            gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                                                             <  2:556031‑M1/143‑83 (MQ=255)
                                                                            gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                                                             <  1:492135‑M1/143‑83 (MQ=255)
                                                                             aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                            >  2:839381‑M1/1‑60 (MQ=255)
                                                                             aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgagcctgagctatatcgtctctacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                            >  2:813847‑M1/1‑60 (MQ=255)
                                                                               aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcgtcactccgctcatggcggtccctccgcccgagtcaccaccgtattcc                                                          >  1:64159‑M1/1‑58 (MQ=255)
                                                                               aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggccgagtcttcaacgtatccc                                                          >  1:555643‑M1/1‑58 (MQ=255)
                                                                                aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgctcctcactacgttcacgtccgtctctgcgccagcgccttcaccgtcctcca                                                         >  1:250496‑M1/1‑57 (MQ=255)
                                                                                  aaaacGGCGCCTCCTCAGTCGCCTTAAAAATCAGTTTGCCAGCACCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                       <  2:137220‑M1/143‑89 (MQ=255)
                                                                                  aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                       <  2:1096933‑M1/143‑89 (MQ=255)
                                                                                   aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                      <  2:727619‑M1/143‑90 (MQ=255)
                                                                                     aaGGCGACTCATCAGTCGCGTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcg                                                    <  1:790653‑M1/143‑92 (MQ=255)
                                                                                       ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctccgcggcagagtcgtcaacgtattccagatcgca                                                  <  1:582709‑M1/143‑94 (MQ=255)
                                                                                        gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaaggtattgcagatcgcaa                                                 >  2:993183‑M1/1‑49 (MQ=255)
                                                                                        gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa                                                 >  2:964551‑M1/1‑49 (MQ=255)
                                                                                         cGACTCATCAGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                                <  2:86292‑M1/143‑96 (MQ=255)
                                                                                          gACTCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctgcggccgagtcttcaccgtcttccagatcccaaac                                               >  1:138731‑M1/1‑47 (MQ=255)
                                                                                              catcaGTCGCCCTAGGAATCAGTGGGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgccttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattgcagatcgcaaaccgct                                           <  1:293857‑M1/143‑101 (MQ=255)
                                                                                               atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt                                          <  1:615‑M1/143‑102 (MQ=255)
                                                                                               atcaGTCGCCTAAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgttggtctctgcggcagagtattcaaagtattccagatcgaaaaccgctt                                          >  2:730579‑M1/1‑42 (MQ=255)
                                                                                                taagtCGCCGTAAACCACAGTTTGCGAGCGCCGCCTTCGGCcgtcccctgcactccaatgatgcgcccgtgttcggtcatcattactttcatggcggtctctgcggcagagtcttcaacgtattccagatcgcaaacctcttc                                         <  2:763635‑M1/141‑103 (MQ=255)
                                                                                                    tctccttaAAAATCATTTTGCCAGCGCCCCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctgcggtcctcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaaatcgcaaaccgcttcgccg                                     <  1:973866‑M1/140‑107 (MQ=255)
                                                                                                       ccTTAAAAATCAGTCTGCCCGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                  <  1:216766‑M1/143‑110 (MQ=255)
                                                                                                               atcgctttgccagCTCTGCCTTCTTCcggcccgtgcacttcattgatgcgcccgtcttcggtcatcgctacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                          <  1:7222‑M1/138‑118 (MQ=255)
                                                                                                               aTCAGTTTGCCAGCGCCGCCTCCTGCcgtcccctgcacttcaacgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                          <  1:803083‑M1/143‑118 (MQ=255)
                                                                                                                 cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctacagtacgcagtgcgttcatgtcggtctctgcggcagagtcttcgacgtattcgagatcgcgaagcgcttcgccgttcacgactccgg                        >  2:420893‑M1/1‑24 (MQ=255)
                                                                                                                   gtctgccGGCGCCGCCGTCCGCcgccccctgcacttccacgacgcgcccgccttcggtcatcactacgtacatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                      <  1:246813‑M1/140‑122 (MQ=255)
                                                                                                                   ggttgcCAGCGCCGCCTTCTGCcgtccccggcacttcaagtttgcgcccgtcttcggtcatcactacgttcatgtccggctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                      <  1:178454‑M1/141‑122 (MQ=255)
                                                                                                                   gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttccacgtattccagatcgcaaaccgcttccccgtacacaattccgaca                      >  1:628800‑M1/1‑22 (MQ=255)
                                                                                                                        ccAGCCCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccacatcgcaaaccgcttcgccgttcacaattccgacagaaac                 <  2:48259‑M1/143‑127 (MQ=255)
                                                                                                                         cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccggtcacaattccgacataagca                >  2:600048‑M1/1‑16 (MQ=255)
                                                                                                                          aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttccacgtattccagatcgcaaaccggttgcccgttcacaattccgacagcaactg               >  1:1024956‑M1/1‑15 (MQ=255)
                                                                                                                          aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagcaactg               >  2:1020789‑M1/1‑15 (MQ=255)
                                                                                                                            cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg             <  2:1042972‑M1/143‑131 (MQ=255)
                                                                                                                               cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccagaaactgcggct          >  2:489646‑M1/1‑10 (MQ=255)
                                                                                                                                   ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcagacagaaactgctgctaccc      >  2:1006944‑M1/1‑6 (MQ=255)
                                                                                                                                     cTGCcgtcccctgcacttcaatgatgcgcccgtcttccaacatcactactgtcgtgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatc    >  2:472739‑M1/1‑4 (MQ=255)
                                                                                                                                      tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcgaccatcc   >  2:264652‑M1/1‑3 (MQ=255)
                                                                                                                                       gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc  >  2:663983‑M1/1‑2 (MQ=255)
                                                                                                                                        |                                                                                                                                             
TGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCT  >  NC_000913/3815721‑3815998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: