| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,020,961 | A→G | intergenic (‑42/‑177) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,020,961 | 0 | A | G | 98.4% | 192.1 / NA | 61 | intergenic (‑42/‑177) | sulA/sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (33/27); total (34/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAT > NC_000913/1020822‑1021089 | ataggcgccgCTGTGGTGGTTTCCGGAGTGACACGCGCAATTTGACTTGCGGCGGATGAGCACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCAt < 1:294165/134‑1 (MQ=255) aGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCa > 1:487003/1‑143 (MQ=255) cccGGCTGTAGTGTTTTCCGTAGAGACACGCGCCATTTTACTTGCTGCGGATGAGAACGACGCAGAACGAGGTGCATCGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACCATCTGAATGTACGGTGCACCCAgc > 1:325682/1‑142 (MQ=255) ccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCGGTg > 1:936566/1‑143 (MQ=255) ccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTg > 2:183463/1‑143 (MQ=255) cGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGa < 1:758600/143‑1 (MQ=255) cGGCTGTAGGGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGTAAGGAGTTCAAACCCTGATGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGa < 2:258242/143‑1 (MQ=255) cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGacaa > 1:1112360/1‑143 (MQ=255) ttggtTTTCCTTAGAGACACGCGCAATTTTACTTGCGGCGTATGATAACGACGAAGAACGATGTGCAGAGCCTGAAGTATACATAAGCAATCCAGCCCCTGTGAGTTATTGTATGGATGTACAGTGCATCCAGAGACAACaaa < 1:461383/140‑1 (MQ=255) gtTTGCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGAt < 2:279803/143‑1 (MQ=255) ttgtCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGCACGACGAAGAACGATGTGCATAGCCTGACGTGTACATAATCAATCCAGCCCCTGTGACGTACTGTGTGGCTGTACAGTGCACCCCGTTGCAACAAAGATc > 1:750597/4‑143 (MQ=255) ttCCGTAGAGACACGCGCAATCTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCaa < 2:692909/143‑1 (MQ=255) tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAAc < 2:373854/143‑1 (MQ=255) tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGCTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAAc > 1:890849/1‑143 (MQ=255) ccGTAGAGACACGCGCAACTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATCGATGTACAGTGCATCCAGTGACAACAAAGATCAAcc < 2:721246/143‑1 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGCGTTACTGTATGGATGTACAGTGCAACCAGTGACAACAAAGATCAACCCt > 1:53563/1‑143 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACACCAAAGATCAACCCt > 2:440058/1‑143 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGACTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGCTGTACAGTGCATCACGTGACAACACAGATCAACCCt > 1:941737/1‑143 (MQ=255) acacGCGCAAGTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTc < 2:519488/143‑1 (MQ=255) cacGCGCCATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCg < 1:619884/143‑1 (MQ=255) tagttttACTTGCTGCGGATGGGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCGTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga < 1:469951/140‑1 (MQ=255) gaaTTTTACTTGTGGCGGCTGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCACTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga < 1:260083/142‑1 (MQ=255) cacgtgtccatgcggcGGATGAGAACGAGGAAGCGACACGTGGTGGGCGTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga < 2:810545/133‑1 (MQ=255) aaTTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCGTGCAGGGTACATAGTCAATACAGACCCTGTGAGTTACTGTATGGATGTACAATACATCCAGTGAACACAACTATCAACCCTCTTCTCGCAAcgag > 1:1050961/1‑143 (MQ=255) tttACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCt < 1:628578/143‑1 (MQ=255) ttGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACGACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaa > 1:768944/1‑143 (MQ=255) ttGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCGCATCCAGTGCCAACAAAGATCAACCCTATTTTCGGACAGAGCCTCGCaa > 1:773252/1‑143 (MQ=255) gtgatgcGGATGAGAACGACGAAAAACAATGGGCATAGCCTGAAGTGTACATAATCAATACAGCTCCTGTGAGTTACTGTATGGATGAACAGAGCATCCAGAGAGAAAAAAGATCAACACTATTTTCGGAAAGAGCCTCGCaa > 1:614068/5‑143 (MQ=255) tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAttt > 2:1083065/1‑143 (MQ=255) gcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAtttt > 2:706321/1‑143 (MQ=255) gATGAGAACGACGAAGGACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTc < 1:43301/143‑1 (MQ=255) agaACGACGAAGAACGATGTGCATAGCCTGAAGGGTACATAATCAAGCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTg < 2:11718/143‑1 (MQ=255) cgacgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTCAGGAAAGAGCCTCGCCACTACTGGCCTTGGTGa > 1:782651/1‑143 (MQ=255) acgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACg > 2:985557/1‑143 (MQ=255) acgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACg > 2:771159/1‑143 (MQ=255) gaaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGaaa > 1:26129/1‑143 (MQ=255) gaaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAATTTGTCATTGGGGACGGGaaa > 1:874032/1‑143 (MQ=255) ccGATGTGCATAGCCTGAAGTGTACATAAACAATCCCGCCCGTTTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc < 2:1056232/142‑1 (MQ=255) gATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACAt < 2:1016211/143‑1 (MQ=255) gATGCGCATAGCCTGAAGTGTACAGAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACGACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACAt < 2:382736/143‑1 (MQ=255) gtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTCTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATaaa < 2:601644/143‑1 (MQ=255) gCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAtt > 1:1874/1‑143 (MQ=255) gCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGAAGGGGACGGGGAAACGTAACtt > 2:148317/1‑143 (MQ=255) cATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTa > 2:161828/1‑143 (MQ=255) aGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGGTACTGTATGGATGGACAGTGCATCCAGTGACTACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATc < 2:317450/143‑1 (MQ=255) aGCCTGAACTGTATATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATc < 2:970353/143‑1 (MQ=255) ccTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATACATTAATCtt > 1:517991/1‑143 (MQ=255) cATAATCAATCCAGCCCCTGTGAGTTACTGTCTGGATGTACAGTGCACCCCCTCACAACAAAGATCAAACCTATCTTCTGAAAGAGCCTCGCAAATTTTGTCGTTGCTGACGCGAAAACATAAATTAATCTTGCCCCTTAAGa > 1:909559/1‑143 (MQ=255) tAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTCAGact > 1:856728/1‑141 (MQ=255) atcactcCAGTCCCTGCGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATaa < 2:41122/143‑1 (MQ=255) atcaatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAAAAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCCAATTTTGTCGTTGTTGACGGGCACACATAAATTCATCTTGCCCCTTCAGAATag > 2:911745/1‑142 (MQ=255) aatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGtt < 2:174745/143‑1 (MQ=255) tcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGCATACATAATTTAATCTTGCCCCTTAAGAATAAGTTGc > 2:203964/1‑143 (MQ=255) cAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCt > 2:321029/1‑143 (MQ=255) ccccTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATCAATTAATCTTGCCCCTTAAGAATAACTTGACTAtt > 1:40558/1‑143 (MQ=255) ggcgAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg < 2:1026237/140‑1 (MQ=255) aCTGTATGGATGTACAGTGCCCCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAAc < 2:865556/143‑1 (MQ=255) aCTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAAc > 2:150742/1‑143 (MQ=255) cTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACg > 1:705041/1‑143 (MQ=255) tGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTGACgg > 2:972525/1‑143 (MQ=255) tagggATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTGGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAt < 1:604076/140‑1 (MQ=255) | ATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAT > NC_000913/1020822‑1021089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |