| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,415,464 | Δ1 bp | coding (720/2145 nt) | pta → | phosphate acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,415,464 | 0 | T | . | 97.9% | 203.7 / ‑1.7 | 49 | coding (720/2145 nt) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (21/26); minor base C (0/1); total (21/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCTTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGT > NC_000913/2415329‑2415601 | ctctTCCGCAGCTACAGTACACAATGTTGATCCGGCGCAGCTGCAAGAGTCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACcat < 2:679521/143‑1 (MQ=255)ctctTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCCCTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACcat < 2:466528/143‑1 (MQ=255) tCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCaccatc > 2:911475/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATGATCAAc > 2:464564/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAAc > 2:762917/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCACCCT‑TGATTTCTGCTGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAAc < 2:208778/143‑1 (MQ=255) tatactacgcgacgTTGATCCGGCGCTGCTGCTACATTCCTGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAgg < 1:758856/130‑1 (MQ=255) aGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGa > 2:640851/1‑143 (MQ=255) aaCAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATc > 2:329472/1‑143 (MQ=255) tgctCCGGCGAAGCTGCAAGCTTCCGGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGCCTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTcg < 1:465355/140‑1 (MQ=255) tGATTCGGTGAAGCTGCAACAATCAAGCCGGCGGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTcg < 2:333673/143‑1 (MQ=255) ggcgccgctgctGGACTCCAGCCGGCTGCCGGTCCG‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGt < 1:460346/137‑1 (MQ=255) cctcAAGATTCCATCCCCCTGCCTGTACT‑CGGCTGTGTGCCGCGGAGCTTTGACCTGATCCCGACTCGTGCGATCGATATGGCACACCACCTGAA‑GCGACTATTATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATcc < 1:131193/140‑1 (MQ=255) tGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCCACGAAGGCGCCATCAATACTCGCCGCGTTAAATCCg > 2:322608/1‑143 (MQ=255) cAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGCA‑CCGACCATCATCAACGAAGGCGACATCACTACTCGCCGCGTTAAATCCGTc > 1:761142/1‑143 (MQ=255) aagaagCCAGCCCGCTGCCGGTTCT‑CGGGGCTGTGCCGTGGAGCGTTGACCTGATCGCGACTCGTGCGATCGATAGGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAAGACGCGCCGCGTTAAATCCGTCa < 1:161184/143‑1 (MQ=255) ccAGCCCGCCGCCGGTTCT‑CGGCGCTGGGCCGTGGACCTTTGACCTGATCGCGACGCGTGCGAGCGATATTGCGCGCCACCTGAA‑GCGACCATCATGAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCt < 2:415078/143‑1 (MQ=255) aGCCCGCGGCCGGTTCG‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgc < 2:154259/143‑1 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGACGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgcgc > 2:718651/1‑143 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTGTCTgggc > 2:525561/1‑143 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCACCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgcgc < 2:879508/143‑1 (MQ=255) gcccGGGTCT‑CGGCGCTGTGGCGTGGGGCTTTGACGTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgcacgca < 2:516170/141‑1 (MQ=255) t‑cGGCGCTGCGCCGTGGAGCTTGGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGc < 2:511339/143‑1 (MQ=255) ggCGCCGCGCCGTTGAGCTTTGACCTGATCGCGCCTCGTGCGATCGAGATGGCTTGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGcac < 1:318813/143‑1 (MQ=255) cTGTGGCGTGGAGCTTTGACCTGAGCGCGACTCGTGCGAGCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGc < 2:397471/143‑1 (MQ=255) tgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCCTCATCAACGAAGGCGACATCAATCCTCGCCGCGCTAAAACCCACACTTTCCGCGCCCGCACCACTcacaagctgcgga > 1:217355/1‑131 (MQ=255) tgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTgg < 2:692566/143‑1 (MQ=255) gCCGCGGCGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGCA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGa < 1:718597/143‑1 (MQ=255) tttaCCTGCTTGCGGCTCGTGCGATCGATATGGCTCGCCACCTG‑AGGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAAGCCGTCACTTTCTGCGCACGCAGCAGTCCGCACATGCTGGAGCACTTCCGTg < 1:20190/140‑1 (MQ=255) tGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGtt > 2:809166/1‑143 (MQ=255) gATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGTGACATCAATACTCGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCCCATGCTGGAGCACTCCCGTCCCGGCtc > 1:793336/1‑143 (MQ=255) aTCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtct < 2:36546/143‑1 (MQ=255) tCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtctc > 2:561891/1‑143 (MQ=255) cgACTCGAGCGAACGATATGGCGCGCCACCTGTA‑GCGACCATCATCAACGAGGTCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCCCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgc < 2:146901/143‑1 (MQ=255) caCTCGTGCGATCGATATGGCTCCCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgct < 2:484730/142‑1 (MQ=255) tCGTGCGATCGATATGGCTCGCCACCTG‑ACGCGACCATCATCAAGGAAGGCGACATCAATACGCGCCGCGTTAAAGCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGt < 1:342824/143‑1 (MQ=255) gTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGa < 1:206044/143‑1 (MQ=255) gTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGACCTTCCGTGCCGCTTACCTGCTGGTGa > 1:27938/1‑143 (MQ=255) tGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCCATACTCGCCGCGGTAAATACGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGATCTCTGCTGGGGAc > 1:260064/1‑143 (MQ=255) tGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGAc < 2:369109/143‑1 (MQ=255) cgatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTAGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTGTCTGCTGGTGGCtt > 2:344647/1‑143 (MQ=255) gatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTc < 1:783295/143‑1 (MQ=255) gatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTc > 1:610657/1‑143 (MQ=255) tatGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGCCTTCCGCAGa > 2:201222/1‑143 (MQ=255) gCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCGGCAGACCga > 2:20521/1‑142 (MQ=255) gCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCCGGTGACTTCCGCAGACCGt > 1:121496/1‑143 (MQ=255) cTCGCCGCCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCGGCGATAGTTCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTc < 1:318945/143‑1 (MQ=255) tCGCCACCTGAA‑GCGACCATCATCAAGGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCGGGAGCACTTCCGTGCCGCTGCTCTGCTGGTGACTGCCGCGCACCGTcc > 1:748944/1‑143 (MQ=255) ccTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGGCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGt < 2:763171/143‑1 (MQ=255) | CTCTTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGT > NC_000913/2415329‑2415601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |