Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,707,558	Δ1 bp	coding (242/480 nt)	rseC ←	SoxR iron‑sulfur cluster reduction factor component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,707,556	0	A	.	100.0%	191.5 / NA	44	coding (244/480 nt)	rseC	SoxR iron‑sulfur cluster reduction factor component
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (18/26);  total (18/26)

AAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCT  >  NC_000913/2707416‑2707691                                                                                                                                             |                                                                                                                                        agaCTTACGCGAGGAGCCGCGCGCAACCAGGAACCCGCCAATACCACCGAGGATCGCACCACATGATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGCAGCGATAAGGAATAATCCCACCAGCGGCGACATACaac                                                                                                                                       <  2:185391/141‑2 (MQ=255)   gctgatgctaGTAGCTGCCCGCAATCCCTAACCCGCCAATCACACCGAGGATCGCACCACATAATGCTGCGACTTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATaacca                                                                                                                                     <  1:394923/134‑4 (MQ=255)   aCTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGCCAGAAGCAAAGAGGAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGCCAtctaccca                                                                                                                                     >  1:54768/1‑139 (MQ=255)            aGTAGCCGGGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATTCGGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAATGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCgg                                                                                                                           <  1:499808/143‑1 (MQ=255)            aGTAGCCGCGTGCAAGCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCTAAGCTATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCgg                                                                                                                           <  1:499811/143‑1 (MQ=255)              tggCCGCGCGCAATCAGGACCCAGCCAATACCGCTGAGGATCGCACCACATAATGCTTCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATATGGTATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAg                                                                                                                         <  1:565920/141‑1 (MQ=255)              tAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGTGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAg                                                                                                                         <  1:227764/143‑1 (MQ=255)              gaGCCGCGCGAAATCAGGAACCCGCCAATACCGCCGAGGACCGCACCACATAATGCGGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAg                                                                                                                         <  1:456170/142‑1 (MQ=255)                 ccGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAAGGCTGCGACGTCCGCCGCAAAGAGCAGCTGAAAAAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCCGTAATCCGGCGCTa                                                                                                                      >  1:324882/1‑143 (MQ=255)                  cgcgcgCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTaa                                                                                                                     <  2:472334/143‑1 (MQ=255)                       gaaagcAGGAACGCGCAAAAACCTCCGCGACACTCACCACATACTGCTGCAACGACAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAgg                                                                                                                <  1:839179/138‑1 (MQ=255)                             aGGAACCCGCCAATACCACCGAGGATCGCACCGCATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCt                                                                                                          >  1:79136/1‑143 (MQ=255)                               gAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCCGTAATCCGGAGCTAAGCAGGCTGCCTTc                                                                                                        >  1:15450/1‑143 (MQ=255)                               gAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTc                                                                                                        >  2:648389/1‑143 (MQ=255)                                  cccGGCCATACCACCGAGGAGCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGc                                                                                                     <  2:318630/143‑1 (MQ=255)                                        aaTACCACCGAGGATCGCACCACATAACGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATccc                                                                                               <  2:884719/143‑1 (MQ=255)                                               ccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTcc                                                                                        <  2:652731/143‑1 (MQ=255)                                               ccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCACCAATTcc                                                                                        >  2:556380/1‑143 (MQ=255)                                                cGAGGATCGCACCACATAACGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCa                                                                                       <  2:485709/143‑1 (MQ=255)                                                    gATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCCCGCTGCCTTCGGCGATCCCCAAGTCCACtct                                                                                   >  1:438503/1‑141 (MQ=255)                                                    gATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACttt                                                                                   >  2:837688/1‑143 (MQ=255)                                                     aTCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATCCCACtttt                                                                                  >  1:891225/1‑143 (MQ=255)                                                      tCGCATCACATAATGATGCGACGTCAGAAGCAAAGAGGAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACttttt                                                                                 <  2:177/143‑1 (MQ=255)                                                            cacaTAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCCGGCTGCCTTCGGCGCTACCCAATTACACTTTTTGCcgcg                                                                           >  2:848987/1‑143 (MQ=255)                                                             acaTAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCgg                                                                          <  2:683829/143‑1 (MQ=255)                                                                     cggcGACGTGTGGAGCAAGGCGTAGCTGCGATAGCGAGGCGATAGGGTATAATGCCTCTAGCGGCGACATAT‑ACGCTGTAATGCGGAGCTAAGGAGGCTGCCTTCGGCGCTTCTCAATTCCACTTTTTGCCCCGGCACTAACg                                                                  <  1:604342/141‑1 (MQ=255)                                                                        ccacctCAGAAGCAAAGAGCAGCTGGAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTACGGCGCTCCCCAATGCCACTTTTTGCCCCGGCACTAACGGCt                                                               <  1:748691/138‑1 (MQ=255)                                                                          acgcaaGAAGCAACGAGGAGCGGAAAGAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTACTGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACGTTTTGCCCCGGCACTAACGGCtca                                                             <  2:98186/138‑1 (MQ=255)                                                                             tCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCCCGTGTTGCCCCGGCACCAACGGCtcaaca                                                          >  1:346745/1‑143 (MQ=255)                                                                             tCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCtcatca                                                          >  2:388607/1‑143 (MQ=255)                                                                                          gTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACaa                                             <  2:485524/143‑1 (MQ=255)                                                                                          gTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAAAGCAGAGCTAAGCAGGCTGCCTTCGTCGATCCCCAATTCCACTTTTTGCCCCGGCAATAACGGCTCATCACAGGGTACGACaa                                             <  2:211778/143‑1 (MQ=255)                                                                                           tAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAATCCATTTCTTGTCTTGGCACTTACGGCTCATCACAGGGTACGACAAt                                            <  2:627153/143‑1 (MQ=255)                                                                                             gCTGAAAGAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCCCATCACAGAGTACGACAACgg                                          >  1:816234/1‑143 (MQ=255)                                                                                              cTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACCATGGt                                         >  2:278781/1‑143 (MQ=255)                                                                                                    gcgcgaagcgaTAAGGCAGAGTCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAGCACACTTTTTGACCCGGCACTTACGGCTGGTCACAGGGTACGACAATGGTATGCGt                                   <  1:894282/141‑1 (MQ=255)                                                                                                        gaagcgaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGtt                               >  1:281491/1‑143 (MQ=255)                                                                                                             gaaaaGGAATAATCCCACCAGCGGCGACAGAT‑AACCAGTAACGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg                          <  2:323479/140‑1 (MQ=255)                                                                                                             gaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg                          <  2:53843/143‑1 (MQ=255)                                                                                                             gaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg                          <  2:737178/143‑1 (MQ=255)                                                                                                             gaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATCCCACTTTTTGCCCCGGCACTAACGGCTCATCCCAGGGTACGACAATGGTATGCGCGGTTTGccg                          >  1:660543/1‑141 (MQ=255)                                                                                                                 aGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTACACTTTTTGCCCAGGCACTAACGGCTCATCACAGGGTACGAAAAAGGTCTGCGTGGTTTGACGGCCa                      >  1:284268/1‑143 (MQ=255)                                                                                                                  ggAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCaa                     <  2:79136/143‑1 (MQ=255)                                                                                                                         tCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACCACAATGGTATGCGTTGTTTGCGCGCCAAGtttatt              >  2:282856/1‑143 (MQ=255)                                                                                                                            caccaGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTaa           <  1:388607/143‑1 (MQ=255)                                                                                                                                  cggcgACATAT‑CACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACAcgcg     <  1:767663/143‑1 (MQ=255)                                                                                                                                     cgACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATACCCAATTCCACTTTTTGGCCAGGAAGTCACGGCGCATCGCAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCGAGTTTAGTAAACACGCGGCt  >  2:85604/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                        AAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCT  >  NC_000913/2707416‑2707691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑