| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1206693 | 55 (1.040) | 3 (0.060) | 3/284 | 8.3 | 4.8% | pseudogene (551/780 nt) | jayE | pseudogene, e14 prophage,Phage or Prophage Related |
| ? | NC_000913 | 1229450 = | 63 (1.190) | intergenic (+174/+33) | ycgN/hlyE | UPF0153 family cysteine cluster protein/hemolysin E | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGATTGCCAGCAGTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGG > NC_000913/1206551‑1206832 | atgatTGCCAGCAGTGACCTGATTAATCCCATTCCGGCAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCa > 2:98584/1‑143 (MQ=255) atTGCCAGCAGTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACCACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGCGGATTTGCaaaa > 1:663983/1‑140 (MQ=255) ccAGCAGTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCcgc > 2:848577/1‑143 (MQ=255) cgcagTGACGTGATTAAGCCCATTCCGGAAGGATCAACGGAGACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGt < 1:691092/142‑1 (MQ=255) agcagTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCAGATCCGCGt > 2:349519/1‑143 (MQ=255) agcagTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCCCTGATTTGTATGTGTTCAGGCCGGTGGCCCATACGGTGGACTTTCATCTCcgcct > 1:54909/1‑141 (MQ=255) cagTCACCTGATGAAGCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGTTGGATTTTCATATCCGCGTGa < 2:299586/143‑1 (MQ=255) ctgattagcgccggtCCGGAAGACTCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGa < 1:332545/129‑1 (MQ=255) tGATTAATCCGATTCCGGAAGAATCAACGGAAACGGTGGTAAGACAAGATATCGGGCCACTGGCCCCGGTGGCAGGCGCTGATGTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGac < 2:593850/143‑1 (MQ=255) tAATCCCATTCAGGAAGAATCACCGAAAACGGCGGCAAGACAACATATCGGGACACTGGCACCGGGCGCAGGCACTGATTTGTATGTGTTCAGGCCGGTGGCACATACGCTGGACTTTCATCTCGGCGTGACGCCGGacacac > 1:506089/1‑143 (MQ=255) tCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTGTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAg > 2:87630/1‑143 (MQ=255) ggAACCGGCGGCAAGACAACATATCGGCCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACcg < 1:777407/143‑1 (MQ=255) gAAGCGGCGGCAAGACATCAGATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACcgc < 1:569341/143‑1 (MQ=255) aaaCGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACcgcg < 2:159695/143‑1 (MQ=255) cggcAACACAACGTGTCGCGCGACTGGCCCCGGTGGCAGTCTCTGATTTGGATGTGTTCGGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTg < 1:663740/143‑1 (MQ=255) caacaTATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCCTTACCGCGGAGGTGcgttcgtt > 1:524336/1‑143 (MQ=255) agtctgtgggTCACGGGCCCCGGTGGCAGGCTCTGTTTTGTATGTGTTCCGGCCGGTGGCACATACGGTGGATTTTCATCTCCGCTGGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTcc < 1:538147/136‑1 (MQ=255) acaTATCGGGCCACTGGCTCCGGTGGCAGGCACTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTcc < 2:311489/143‑1 (MQ=255) caccggggCCAGTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGCGGTGCGTTCGTTCctg > 1:663417/6‑143 (MQ=255) ctCGGGGCGCTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTGCATATCCGCGTGACGCGGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCctgct < 1:747119/142‑1 (MQ=255) gtgcgaCTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCg < 2:201528/138‑1 (MQ=255) gggCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGCTGCGTTCGTTCCTGCTGCg > 1:760391/1‑143 (MQ=255) aCTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATg < 2:238911/143‑1 (MQ=255) ccGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACAGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATcc > 2:871672/1‑143 (MQ=255) ggTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGCTGCGTTCGTTCCTGCTGCGCGATGGTTGTCCGc > 2:112181/1‑143 (MQ=255) ggCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAgg > 1:399783/1‑143 (MQ=255) cAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGCG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGACGGCTATCAGCggggc > 1:82809/1‑142 (MQ=255) ggCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGCCGCCGGAAACACCAGAAATACGGG‑‑CTGCAATTAACGCGGAGTTGTGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGgaga > 2:368912/1‑143 (MQ=255) gCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCC‑GACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAAc > 2:391573/1‑143 (MQ=255) gCTCTGATTGGTAGGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGaa < 2:54909/143‑1 (MQ=255) tGATTTGTATGTGTTCAGGCCGGAGGCACATACGGTGGATTATCATATACGCGTGACGCCGGGCACACCAGAAGTACGGG‑‑CCGCCATTACCGCGGAGTTACGTTCGTTGCTGCTGCGCGATGGTCGTCCGCCGGgagagcgcg > 1:610640/1‑138 (MQ=255) gATGTGCATGCGTTCCGGCCGTTTTCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTGGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCaa < 2:163675/143‑1 (MQ=255) agttGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAAGACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAg < 1:439915/141‑1 (MQ=255) aTTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGGGATCGTTCCAGCTGCGTGATGGTTATGCGCAGGgaggagtggag > 1:837730/1‑135 (MQ=255) aTTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAg < 2:6492/143‑1 (MQ=255) aTTTGTATGTGTTCAGGCCGGTGGCACATACGGTGCATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAAGTCAAg > 2:155127/1‑143 (MQ=255) tttGTATGTGTTCAGACCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAgg < 1:92866/143‑1 (MQ=255) cgagtTCTGGCCGGTGGCGCATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATcgc < 1:311522/140‑1 (MQ=255) gtggccgggCCGGTGGCACATACGGTGGTTTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCAGTACCGCGGAGGTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATcgcg < 1:729275/136‑1 (MQ=255) gggcGGGGGCGCATGCGGGGGGTTTTCAGGTCGGGGTGACGCCGGACACTCCGGAAATACGGG‑‑CTGCCAGGACCGCGGAGGTGCGTTCGTTGCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGt < 1:340465/140‑1 (MQ=255) ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGCACTCAAGGTATCGCGGATCAgc > 1:246309/1‑142 (MQ=255) ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGt > 2:525100/1‑143 (MQ=255) gCCGGTGGCACATACGGTGGGTTTTCATATCCGCGTGACGCCGGACACACCAGCAGTACGGG‑‑CTGCCATTACCGCGGCGTTGCGCTCGTTCCTGCCGCGTGATGGCTCTCCGCAGGGCGACCTCCAGGTATCGCGGATCAGTg > 1:899741/1‑143 (MQ=255) gCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTg > 2:243147/1‑143 (MQ=255) ccGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGGTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGCATCGCGTATCAGCGa > 1:588769/1‑143 (MQ=255) gTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGc > 2:889712/1‑143 (MQ=255) gTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGc > 2:264207/1‑143 (MQ=255) gcgccgccGGTGGGGTTGCGTATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGAt < 1:752962/136‑1 (MQ=255) gCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGCTGCGCTCGTTCCTGCTGCGTGATGGTTCTCCGCAGGGAGGACGCAAGGTCTGGCGGATCAGGGAGGCGAt > 1:536002/1‑143 (MQ=255) acaTACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGAttt > 2:702084/1‑143 (MQ=255) caTACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTc < 2:609323/143‑1 (MQ=255) tACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGGGACGCCATTTCCg > 1:69942/1‑143 (MQ=255) cGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGCGACCCTCCAATA‑TG‑TGAGTTGCGTTCGCTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGt < 2:906195/143‑1 (MQ=255) ggTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑ATGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTg > 2:872941/1‑143 (MQ=255) agtttCGTATCCGCGTGACGTCGCCCACACCAGCACTACGGG‑‑CTGCCATTAGCTCGGAGTTGCGTTAGTTGCTGCGGCGCGAGGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAAc < 1:740198/141‑1 (MQ=255) aTTTGCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAAc < 1:863695/143‑1 (MQ=255) ttCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAACggg < 2:574881/143‑1 (MQ=255) | ATGATTGCCAGCAGTGACCTGATTAATCCCATTCCGGAAGAATCAACGGAAACGGCGGCAAGACAACATATCGGGCCACTGGCCCCGGTGGCAGGCTCTGATTTGTATGTGTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGG‑‑CTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGG > NC_000913/1206551‑1206832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |