New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458799	1 (0.020)	35 (0.680)	32/276	0.6	97.3%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609347	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

GGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTA  >  NC_000913/609210‑609487                                                                                                                                          |                                                                                                                                              ggAGCTTACAGGTGGCCATTCGTGGGACCGTACCCCTGACAGCCTACAAAACGCACTTGAAGAACGCGACGCATCGTCGTAAAGAGGCACCGAGGCGTCGCATTCTTCAGATGGATCAACCCTTAAGTTAGCGCTCATGGGAg                                                                                                                                          >  1:283877/1‑143 (MQ=11) ggAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAg                                                                                                                                          >  2:727528/1‑143 (MQ=11) ggAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAg                                                                                                                                          <  2:491012/143‑1 (MQ=11)      ttACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTGTGGGAGTACTc                                                                                                                                     >  2:232070/1‑143 (MQ=17)          aGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCg                                                                                                                                 <  2:139822/143‑1 (MQ=38)           ggTGGCCATGGGGGGGGGCGTATCCGTGACAGCCTACAAAACGCAAGTGAAGGACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                                <  1:31714/143‑1 (MQ=14)                     cGTGAGACAGTATGCCTTACAGCCTACAACACGCAATTGAAGCACGCGAGGCATCGTCTTAACGAGGCACCGTGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                      <  1:99345/143‑1 (MQ=14)                       tGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgg                                                                                                                    >  1:257759/1‑142 (MQ=255)                            cAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTACGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggt                                                                                                               >  2:262377/1‑143 (MQ=255)                            cAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACACTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCGGGTTgtcaggt                                                                                                               >  2:79107/1‑143 (MQ=255)                              gTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATCCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtca                                                                                                             <  2:819726/143‑1 (MQ=255)                              gTAGCCCCGACAGCCTGCAAAGCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtca                                                                                                             <  1:498677/143‑1 (MQ=255)                               tATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAAGCGTCGCATTGTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATGCCCGCATATCCGGTTgtcaggtaag                                                                                                            >  1:345884/1‑143 (MQ=255)                                     tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATAATTCAGTCGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAGTCCCCGCACATCCGGTCGTCAGGTCACGATGGt                                                                                                      >  1:795441/1‑143 (MQ=17)                                        cAGCCTGCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAg                                                                                                   >  1:160511/1‑143 (MQ=255)                                         aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAgg                                                                                                  >  2:270450/1‑143 (MQ=255)                                               cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGCTAAGGCACCTg                                                                                            >  2:695209/1‑143 (MQ=255)                                                 aaaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCt                                                                                          >  2:402111/1‑143 (MQ=255)                                                   tcGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCttt                                                                                        <  1:386202/142‑1 (MQ=255)                                                    cGCTATTGCAGCTCGCGTCGCATCGTCTTAACGAGGCCCCGCCGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTCAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTa                                                                                       <  1:8411/143‑1 (MQ=21)                                                     gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTCGTTTac                                                                                      >  1:298950/1‑143 (MQ=255)                                                      cAACTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTGAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTac‑a                                                                                    <  1:640501/143‑1 (MQ=255)                                                          tGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCGGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACttt                                                                                <  1:125654/143‑1 (MQ=255)                                                           gccccccactacgCATCGTCTTGACGCTGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCTGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTc                                                                               <  2:901109/131‑1 (MQ=25)                                                           gaagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTc                                                                               >  1:168938/1‑143 (MQ=255)                                                           gaagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTc                                                                               >  2:615579/1‑143 (MQ=255)                                                              gaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGcc                                                                            >  1:507091/1‑143 (MQ=255)                                                                  gggAGGCTTCGTCTTTACGCGGCACCGAGGCTTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTg                                                                        <  1:593753/141‑1 (MQ=255)                                                                   cgAGGCATCGTCTTAACGAGGCACCTGGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTgg                                                                       <  1:69687/143‑1 (MQ=255)                                                                           ggttttAGCGAGGCACCGAGGCGCCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGGTTATGGGAGTAATCCCCGCAGATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGAt                                                               <  1:161920/139‑1 (MQ=37)                                                                           cGTGTTACCGATGGACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTCAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGAt                                                               <  1:797549/143‑1 (MQ=37)                                                                                tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTg                                                          >  2:639822/1‑143 (MQ=255)                                                                                     aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTCC‑ACTTTCGCCCGTGGTCCGTGATGGCTGCGGGc                                                     >  1:585080/1‑143 (MQ=255)                                                                                            gAGGCGTCGCATTCTTCAGATGGGTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGt                                              <  1:317641/143‑1 (MQ=255)                                                                                             gggCGTCGCTTTCTTGAGATGGTTCAACCCTTAAGTTAGCGCTTATGGTTGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTa                                             <  1:585004/142‑1 (MQ=255)                                                                                             aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCACGTGGTGAGTGATGGCTGCGGGCGAATCGTa                                             >  1:223772/1‑143 (MQ=255)                                                                                                cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTACTCCCCGCATATCCGGTTGTCAGGTCAGGGTGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGAGGCCAGGGATGGCGGGGGGCGAACCCTACCa                                          >  1:273002/1‑143 (MQ=25)                                                                                                cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCCGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCa                                          <  1:727528/143‑1 (MQ=255)                                                                                                 gTCGCATTCTTCAGATGGTTCAACCCCTAAGTTAGCGCTTATGGGAGTAATCCCCGCCTATCCGGTTGCCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTCGTCAGTGATGGCTGCGGGCgcaccgccccag                                         >  1:673372/1‑132 (MQ=37)                                                                                                  tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCGCGTGGTCAGTGATGGCTGCGGGCGGATCGTACCAgc                                        >  1:283839/1‑142 (MQ=255)                                                                                                  tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGa                                        <  1:337082/143‑1 (MQ=255)                                                                                                  tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGa                                        <  2:433057/143‑1 (MQ=255)                                                                                                  tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGa                                        >  1:747504/1‑143 (MQ=255)                                                                                                  tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTACCTTTACGAGGGTAAGCCA‑CTACTGCGCAACGTTCCCCCGTGGTCCGTGGCGGCTGGGGGCGAATCGTACCAgc                                        >  1:405205/1‑142 (MQ=12)                                                                                                          ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCa                                >  2:878005/1‑143 (MQ=255)                                                                                                            cAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAAt                              >  2:654997/1‑143 (MQ=255)                                                                                                                   ttCAACCCTTAAGGTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCgt                       <  2:731225/143‑1 (MQ=255)                                                                                                                      actccTTAAGTTAGCGCTTAGTGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGtt                    <  1:79107/140‑1 (MQ=255)                                                                                                                      aaCCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGtt                    <  2:160511/143‑1 (MQ=255)                                                                                                                          ctgaaGTTAGCGCGGATTGGAGTAACCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGAGGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGca                <  1:500209/140‑1 (MQ=255)                                                                                                                           ttAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcac               >  1:196094/1‑143 (MQ=255)                                                                                                                                     gcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGa     >  1:108487/1‑143 (MQ=255)                                                                                                                                     gcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAGGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGa     <  2:62296/143‑1 (MQ=255)                                                                                                                                        tATGGGAGTAATCCCCGCATCCCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTa  <  1:232070/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                              GGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAC‑ACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTA  >  NC_000913/609210‑609487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.