New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 730507NA (NA)5 (0.100) 4/272 7.4 9.3% coding (925/4194 nt) rhsC Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor
?NC_000913 = 730543 51 (0.970)coding (961/4194 nt) rhsC Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGACAGCGACGGGCGGGT  >  NC_000913/730401‑730682
                                                                                                                                              |                                                                                                                                           
tCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCCCCGGTGCGCGATCGCTGGACGCCCCgcgccg                                                                                                                                             >  1:836244/1‑143 (MQ=11)
 ccTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCggggcgg                                                                                                                                            >  2:563865/1‑142 (MQ=17)
  cTGATACCCTGCCGGGTTACACCGAATATGGCCGGGGCAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcgca                                                                                                                                           >  2:590528/1‑141 (MQ=17)
    gATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGGCCCGGAATACCCGGAGAATTTGCCTGCCGCGCCGCCGGTCCGCTAGGGCTGGACGGCCCCCGGCGAACt                                                                                                                                         >  1:72733/1‑143 (MQ=11)
    gATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGGGCGCCAGGGCTGGACGCCCCGCGGCGaccg                                                                                                                                         >  1:702234/1‑140 (MQ=255)
       aCCCGGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                                                                                                                                      <  1:907092/143‑1 (MQ=17)
         ccTGCCGGGTTACACCGACTATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAAGACCCGAAGACGTTACCTGCCGCGCCCCTAGCTCGCTATGGCTGCACGCCCCTCCGCGAACtcggcg                                                                                                                                    >  1:831278/1‑138 (MQ=11)
         ccTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcgg                                                                                                                                    >  2:584689/1‑143 (MQ=32)
            gCCGGGTTACGCCGAAGATGGCCGGGACACCGGCAGCCGTCTGGCTGCCGTGTGGCTGACGCACGACCCGGAAGACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg                                                                                                                                 <  1:428764/143‑1 (MQ=11)
            gCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg                                                                                                                                 <  2:102882/143‑1 (MQ=35)
               gggTTATACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtgt                                                                                                                              <  1:426951/143‑1 (MQ=21)
                 gTTACCCCGAAGAGGGGCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTAt                                                                                                                            <  1:776886/143‑1 (MQ=255)
                  ttACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCCGCCCCGCCGCTGGGGCGCCATGGCTGGCCGCCCCGCGGCGAACTCGcgccgggctctg                                                                                                                           >  1:547294/1‑137 (MQ=11)
                   tACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa                                                                                                                          <  1:454313/143‑1 (MQ=35)
                    acacCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc                                                                                                                         <  2:729478/143‑1 (MQ=35)
                      acCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGGAGGACCg                                                                                                                       >  1:757351/1‑143 (MQ=25)
                                 ccGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATacac                                                                                                            >  2:262554/1‑143 (MQ=255)
                                       cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAGTACACCGGTgc                                                                                                      >  2:140362/1‑143 (MQ=255)
                                        aaCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCGGCGCCGCTCGTCCGCTATGGCGGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTgcg                                                                                                     <  2:909451/143‑1 (MQ=255)
                                           ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAg                                                                                                  <  2:173535/143‑1 (MQ=255)
                                             cATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCt                                                                                                >  2:687828/1‑143 (MQ=255)
                                                   tctgtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTttactt                                                                                          <  1:16081/143‑1 (MQ=255)
                                                     tgtctgCCGTGCGGCTGGCGCGCGACCCGGCATACCCGGAGAAGTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTttacttac                                                                                        <  1:806253/143‑1 (MQ=17)
                                                     ggtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGTTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTttacttac                                                                                        <  2:44165/142‑1 (MQ=255)
                                                      gccggCCGTGTGGCTGACGCACGCCCCGGAATCCCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACg                                                                                       <  1:422401/139‑1 (MQ=255)
                                                       tctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACga                                                                                      <  1:89280/143‑1 (MQ=255)
                                                       tctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCGCCGCGAAATGGCCGCGGGGTATGACCGGAGCAATACACAGGTACGGAGCTTTACTTCCga                                                                                      >  1:849468/1‑143 (MQ=17)
                                                                       cGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACGGGGGc                                                                      >  2:237231/1‑143 (MQ=255)
                                                                        gCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCATCCATCCACAGGTGCGCAGCTTTACTTACGATGCTCAATACCGGGGcc                                                                     >  1:430243/1‑143 (MQ=14)
                                                                        gCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACCCAAGGGGGCAGCGGTACTGAGCATGATaagtgcaggcgcc                                                                     >  1:436919/1‑132 (MQ=14)
                                                                        gCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACCGGTGCGCAGCTTTACTTACGATGATCAATCCCGGGGcc                                                                     >  2:441442/1‑143 (MQ=255)
                                                                            gACCCGGAATGCCCGGAGAAGTTACCTGCCGCGCCGCGGGTGCGCTATGGCTGGACGCCCCGCGGCGAACGGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAt                                                                 <  1:909245/143‑1 (MQ=255)
                                                                              cccGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAtgg                                                               >  2:886960/1‑143 (MQ=255)
                                                                               ccGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAtggt                                                              <  2:400423/143‑1 (MQ=255)
                                                                                cGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAtggtg                                                             <  1:640789/143‑1 (MQ=255)
                                                                                       cccGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTTGATGCGCCTCTGCGAACTGGGGGCGGGGGATGACCGCCGCAATACACAGGTTCGCTGTTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCAcc                                                      <  2:125657/143‑1 (MQ=17)
                                                                                         cGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAGGGGGGCGCGCCgg                                                    >  1:703664/1‑142 (MQ=255)
                                                                                            agaATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAGGGTGGCGCACCCTcac                                                 >  1:622171/1‑143 (MQ=255)
                                                                                             gcaTTCACCTGCCGCGCCGCTGGTGCGCTATCGCTGGACGCCCCGAGGCGAGCTGGCGGCGGTCTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTcaca                                                <  2:466923/141‑1 (MQ=17)
                                                                                                tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGCTGGTGGCGCACCGCCACGCgg                                             >  1:450814/1‑143 (MQ=255)
                                                                                                     cTGCCGCGCCGTTGGTGCGCGATGGCTGGGCGCCCCGCGGCGAACTGGCGGCGGTGTACGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGa                                        <  1:806938/143‑1 (MQ=255)
                                                                                                     cTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATCCACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAGGGTGGCGCACCGTCACACGGGCCGa                                        >  2:359611/1‑143 (MQ=255)
                                                                                                      tGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGCTGGTGGCGCACCGTCACACgtggggaa                                       >  1:637891/1‑136 (MQ=255)
                                                                                                               gcTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCt                              <  2:323991/143‑1 (MQ=255)
                                                                                                                cTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGCTGAGAAATACCGGGGCCGGATGGCGGCGCACCGTCCCACGGGCCGACCGGCAATCTg                             >  1:528716/1‑143 (MQ=17)
                                                                                                                     gcgcTGAGGCGGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTAcc                        <  2:57063/143‑1 (MQ=255)
                                                                                                                     gcgcTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCCCCCGGGCCGACCCGACAACTGTTAcc                        >  1:267938/1‑143 (MQ=18)
                                                                                                                        cTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGtt                     >  2:838592/1‑143 (MQ=255)
                                                                                                                         tATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACCCAGGTGCGCAGCTGTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATccgttaccgtta                    >  1:914690/1‑143 (MQ=255)
                                                                                                                            ggCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTAGGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGa                 <  2:822563/143‑1 (MQ=255)
                                                                                                                             gCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGGGCGCAGCTTTACTTACGATGATAAATACCGGCGCCGGATGGGGGCGCACCGGCACGCGGGGCGACCGGCAACCGGCTAccccgacgac                >  1:6870/1‑135 (MQ=17)
                                                                                                                                    gCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGACAGCGCcg         >  1:163951/1‑143 (MQ=255)
                                                                                                                                         gcagcgAACTGGCGGCGTCGTATGGCCGCAGCAATACACAGGTGCGCAGCTTTACTTCCGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGACAGCGAcgggcgg    <  2:650590/140‑1 (MQ=17)
                                                                                                                                           ggcgAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGACAGCGACGGGCGGGt  >  2:854030/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                           
TCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATCTGTTACCGTTACGACAGCGACGGGCGGGT  >  NC_000913/730401‑730682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.