| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 781369 = | 55 (1.040) | 8 (0.150) +G |
3/282 | 8.3 | 13.4% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521126 | 49 (0.930) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCA > NC_000913/2520986‑2521264 | aTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGCAATTGAGAAGTGGGTGATTATCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCCCCCACCACttt > 1:13388/1‑143 (MQ=255)aTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACttt > 1:338454/1‑143 (MQ=255)aTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAACTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACttt > 2:819025/1‑143 (MQ=255) ccGTCATCACCCACCAACTCCTTTCTGTAGTCTCCTCCGTGTAGCAGGCAACTCTGACGTGGGTGATTGCCTCAGCTGCGCGAGCACCTCCCTTACACGTAGGCGGTCGGCGCTCCCACCCCGCCACCACCCACCCCTTcctc > 1:187891/1‑143 (MQ=255) ccGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtcgc > 2:502280/1‑141 (MQ=255) cGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCg > 2:750444/1‑143 (MQ=255) catcaCCCCCCATCTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTTCTCGCCa < 2:312743/143‑1 (MQ=255) tcaCCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATACCCCACCACTTCCTCGCCAGc > 1:432550/1‑143 (MQ=255) tcaCCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTAAGCTGAGAAAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGGTCCCGCCATCACCCACCAAttgtacacgagc > 1:741794/1‑133 (MQ=21) aaCTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTGCGATCCCGTCATCACCCACCACGTGCTCGCCAGCTAAATctct > 1:297516/1‑143 (MQ=255) aaCTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCCGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCt < 2:193352/143‑1 (MQ=255) actcctctaggcggTCTGCGGCGTGAAGCGAGAACTCGAGGAGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTTCTCGCCAGCTAAATTTCtt < 1:191373/130‑1 (MQ=17) tttATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCCCTTTCTCGCCCGCGACATTTCTGGTa‑aa > 2:100245/1‑143 (MQ=21) ggctcCGCCATGTCGCGAGACGTCGCGACGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGaa < 1:289538/141‑1 (MQ=18) tAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAACTGTCTTGTA‑AACCGGTGAAGTACCGacctgg > 2:769941/1‑138 (MQ=18) aggcgttGAGAAGTGGGTGATTAGCTCAGCTGGGAGTGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACTCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGAt < 1:787385/138‑1 (MQ=255) ttGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTGGCCAGCTAACTTTCTTGTA‑AGAATGTGAAGTGCCGAAGTGGGTGCTTAGCt > 2:811582/1‑143 (MQ=21) gaggagTGGGTGACTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCa < 2:889083/143‑1 (MQ=255) gagaCGTGGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCGAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCa < 2:892229/143‑1 (MQ=255) aTTTGCTCGGCTGGGAGAGCGCCTACCGTCCCGGGGGGCGGTGGGATCTACGATCTCGTAGTCACCCTCCCCCTACTCGACAGGCAAATTATCTGTA‑AAAGTGTGAAGAAACGGAGGGGGTGATTAGCTCAGCTGGGAGAGCa < 1:178282/143‑1 (MQ=255) ctatcTCAGCTGAGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 2:579473/139‑1 (MQ=255) cTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTcc < 2:430975/143‑1 (MQ=255) tCAGCGCGGAGAGCACCTCCCCTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTGCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTccc < 2:732978/143‑1 (MQ=255) cgCTGGGTGAGCACCTCCTTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTGCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGACGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCtt < 1:15782/142‑1 (MQ=255) gCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTa < 2:297516/143‑1 (MQ=255) tGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTACTCGCGAGATCAATGTCTGGTA‑AGAATGTGACGTACCGAAGCGGGGGAGCAGCTCCGCAGCGAGCGCGCCGCGCTAACa > 1:774869/1‑143 (MQ=9) ggAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGCGCACCTCCCTTACGag > 2:445306/1‑143 (MQ=255) gagCACCTCCCTTACCAGGAGGGGGTCGGCGGCTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGTACCTCCCTTACAaggag < 2:309711/143‑1 (MQ=255) cccTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGATATCTTTCGGGTC‑AAAATGTGACGTACCGACGAGTGTGCTTAGGTCAGCTGCCAGAGCACCCCCCTAGAAAGGAggggcgcgc > 1:33810/1‑138 (MQ=16) ccTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACCAGGAGGAGggcggc > 2:793504/1‑143 (MQ=255) cTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCCTCGCGAGCTAACTTTC‑TGTAGAGCATTTGAATTACCGACGTGTGTGCTCAGCTCCGCTGCCAGAGCACCTCACTTACATGGAggggcgccggg > 1:741446/1‑136 (MQ=12) aCAAGGAGGGGGTCGGGGGTGAGCTCCCGTCATCACCCACCACTTGCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGtt < 2:366890/143‑1 (MQ=37) aaGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCg > 2:706559/1‑143 (MQ=255) aggaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGa > 2:299949/1‑143 (MQ=255) gggggTCGGCGGTTCGATCCCGTCATCACCCACTACTTTTTTGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATccc < 2:697946/143‑1 (MQ=255) gTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AGAAGGTGAAGTACCGAAGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTGGGCGGTTCGGTCCCGtcc > 1:248638/1‑142 (MQ=37) cggcggTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGAGGGTCGGCGGTTCGATCCCGtcacc > 2:662952/1‑141 (MQ=255) ttCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATcccccac > 2:234783/1‑143 (MQ=255) gATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAGGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGAGCCCGACATaacccaccgc > 1:28889/1‑141 (MQ=255) aTCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACAcaccaca > 1:535021/1‑142 (MQ=255) tCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACtt > 2:132144/1‑143 (MQ=255) tCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTAACAGGCGCGGGCGGTCGGTTCGATCCCGCCCTCACCCACCACtt > 1:883101/1‑143 (MQ=25) tCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGATCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACtt > 2:478444/1‑143 (MQ=255) cGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCGTCACCCACCACTTCgg > 2:258417/1‑143 (MQ=255) catcaCCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTc < 2:451808/143‑1 (MQ=255) acccaccACTTGCTCGCCAGCTAAATTCCGTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTa < 2:594439/143‑1 (MQ=255) caccacTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAACTCAGCTGGGCGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGCCGTTAGcc > 1:109149/1‑142 (MQ=255) accacTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTGAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGATTCGATCCCGTCATCACCAACCACTTAGGGTCATTAGccc > 1:298021/1‑141 (MQ=21) ccacTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTcc > 1:618325/1‑142 (MQ=255) | ATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTA‑AAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCA > NC_000913/2520986‑2521264 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |