New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1446765 | 55 (1.040) | 4 (0.080) | 3/264 | 7.8 | 6.8% | coding (519/906 nt) | feaR | transcriptional activator for tynA and feaB |
? | NC_000913 | = 1446820 | 59 (1.200) | coding (464/906 nt) | feaR | transcriptional activator for tynA and feaB | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA > NC_000913/1446684‑1446960 | tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCGGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCGTGGAACAGGc > 1:25830/1‑143 (MQ=255) tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGCTTGTTCCTGGCCTCCTGTAACAGGc > 1:631379/1‑143 (MQ=255) ttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGAt < 1:571571/143‑1 (MQ=255) gAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa < 2:141649/143‑1 (MQ=255) gAAACTGACGTGCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa < 2:261098/143‑1 (MQ=255) aaCTGACGTTCACGACGACGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACt < 2:713906/143‑1 (MQ=255) aCTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTg > 1:716738/1‑143 (MQ=255) tGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTAGTCGTGCTCTCCTGTAACAGGCGATGACTGAg > 1:882589/1‑143 (MQ=255) aggctCACGACGAGGTTGAGCAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt < 1:568838/139‑1 (MQ=255) aCGGTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt < 2:692678/143‑1 (MQ=255) ttCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCa > 1:682191/1‑143 (MQ=255) cgacgaGTTTGAACAGATTTCCGCTGATGACGGACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCAt < 1:343779/143‑1 (MQ=255) gaGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGt < 2:629052/143‑1 (MQ=255) tGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGTCGATGCCTGAGCTACACCATGGGTAAGTc > 2:672810/1‑143 (MQ=255) gAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCa < 1:822408/143‑1 (MQ=255) aGATTCCCGCTGATGAGGGACCTGGCGCATCTGACACACCATCGCATGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGt < 1:302087/143‑1 (MQ=255) aTTCCCGCTGATGAAGTACCGGACGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATTGGTAAGTCAGCGTcc < 1:769108/143‑1 (MQ=255) ccGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCCTGTAAACGGCGATGACTGAGTTGCACCCTGGGGAAGTCAGCGGCCAGTc > 1:258933/1‑143 (MQ=255) aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa > 2:815249/1‑143 (MQ=255) aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATACATGCTCTCCTGTAACAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa > 1:804794/1‑143 (MQ=255) gTACCGGGCGCAGCAGACACACCATCGGCTGTAGCGCAGCTTCACTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAg < 1:890699/143‑1 (MQ=255) tcccgcgggcagcaGACACACGATCGCGTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGa < 2:412264/135‑1 (MQ=255) tACCGGGGGCAGCAGACACGCCAGCGCCTGTAGCGCAGCTTCACTTCCTGTGTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTACCAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTACAGTCTTTCTTCGCAGa < 1:505030/143‑1 (MQ=255) gggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAgg > 2:805686/1‑143 (MQ=255) gggCGCAGCAGACACACCATCGCCTGTACCGCAGCGTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTCACAGCCGATGACTGCGCTGCACCACGGGTCAGCCAGCGGCCAGCCTTTCCGCGCAGATAgg > 1:848216/1‑143 (MQ=255) ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGt < 1:464837/143‑1 (MQ=255) ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGGTGCACCATGGGTAAGTCAGCGTCCAGTGTGTGTGCGCAGATAGGt > 2:430692/1‑143 (MQ=255) cgcAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGttt > 2:651758/1‑143 (MQ=255) aagACACACCATCGCCTGGAGCGCAGCTTCACGTTCTGTTGCAGAAAGTGCCGGATTATGCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAt < 2:263892/142‑1 (MQ=255) gACACCGCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATgg < 2:95691/143‑1 (MQ=255) gACACACCTCCGCCTGTAGTGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGGCTTTCTGCGCAGATAGGTTTTTGATgg < 1:564083/143‑1 (MQ=255) ccTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTCGTGCGCAGATAGGTTTGTGGTGGGGaaagaagggt > 1:498170/1‑136 (MQ=255) tGTAGCGTAGCTTTACTTTCTGTTTCAGAAAGTGGCGGATTATTCATGGTCTCCTGTAGCAGGCGATGACTGAGTTGGACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTc < 2:803595/143‑1 (MQ=255) gTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTcc < 2:716738/143‑1 (MQ=255) gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAGGGGGAGAATATTGTTCcagc > 2:519954/1‑143 (MQ=255) gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGCTTTTGATGGGGAAAATATTGTTCcagc > 1:260750/1‑143 (MQ=255) cgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCcagaa > 1:85774/1‑141 (MQ=255) cAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTGGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCaga < 2:118345/143‑1 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg > 2:162463/1‑143 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg < 2:712447/143‑1 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGAGTATTCATGCTCTCCTGTAACAGGCGATGACTGAGATGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg < 2:712459/143‑1 (MQ=255) aCTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg < 2:824001/143‑1 (MQ=255) aCTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg < 2:159774/143‑1 (MQ=255) gtttGTGTTTCAAAAAGTGCCGGAGTATTCATGTTCTGCTGTAACAGGCGATGACTGAGTTGCACTATGGGTAAGTCAGCGGCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTgg < 1:830304/142‑1 (MQ=255) tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAACATATTGTTCCACCAGAGCGCGTGGc > 1:288327/1‑143 (MQ=255) tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGc > 2:180085/1‑143 (MQ=255) cTGTTTCAGGAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCaaa < 1:450521/143‑1 (MQ=255) tttCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCCGCAGAGTGCGGGGCAAAAGt > 1:239640/1‑143 (MQ=255) gAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCCGCTAGGGTTGTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAGAGGAATGa > 1:546493/1‑143 (MQ=255) aaaGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGCTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGaa > 1:40758/1‑143 (MQ=255) gctgATTATTCATGCTCGCCTGTACCAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGCCCACCCTTTCTGCGGAGATATGTGTTTGAGGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt < 1:151415/140‑1 (MQ=255) ccggcgaattCATGCTCTCCGGTAACACGCTGTGAGTGGGTGGCACCATGAGTAAGGCAGCGCCCAGTCTCTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt < 2:463158/136‑1 (MQ=255) gATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGGTTTa > 1:375594/1‑143 (MQ=255) attattCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTag < 2:444477/143‑1 (MQ=255) gtCATGCACTCCTGTAACAGGCGATGACTGAGTTGCACCATGAGTAAGTCAGCCTCCAGTCTTTCTGCGCAGATACGGTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTagaaga < 2:682191/142‑1 (MQ=255) tCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGAc > 1:330966/1‑143 (MQ=255) gCTCTTCTGTAACAGGCGAGGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGTTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCt < 2:226553/143‑1 (MQ=255) tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTGTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTGCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGTTTGAGCAGACTCCTGc > 1:312785/1‑143 (MQ=255) tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAACTATTGTTCCGGCAGCGTGCGTGGCAAAAGTAATGAAATCTGTTTACAAGACTCCTGc > 2:372019/1‑143 (MQ=255) ggctccaaCAGGCGCTGACTGAGGTGGACCATGGGTAAGTCAGCTTCTAGTCTTTCTGCGCAGATAGGTTTTTGGTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGCCTCCTGCCa < 1:519532/137‑1 (MQ=255) tGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGACGACTCCTGCCAGTa > 1:700723/1‑143 (MQ=255) gTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTATTTCTGCGCAGATAGGATTTGGACGGGGAAAATATTGTTCCAGCCGAGTGCGTGGCATAAGTAATGAACTCGGTATAGCAGACTCCTGCCAGtca > 1:436682/1‑141 (MQ=255) | TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA > NC_000913/1446684‑1446960 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |