New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 144676555 (1.040)4 (0.080) 3/264 7.8 6.8% coding (519/906 nt) feaR transcriptional activator for tynA and feaB
?NC_000913 = 1446820 59 (1.200)coding (464/906 nt) feaR transcriptional activator for tynA and feaB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA  >  NC_000913/1446684‑1446960
                                                                                                                                        |                                                                                                                                            
tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCGGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCGTGGAACAGGc                                                                                                                                        >  1:25830/1‑143 (MQ=255)
tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGCTTGTTCCTGGCCTCCTGTAACAGGc                                                                                                                                        >  1:631379/1‑143 (MQ=255)
   ttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGAt                                                                                                                                     <  1:571571/143‑1 (MQ=255)
     gAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa                                                                                                                                   <  2:141649/143‑1 (MQ=255)
     gAAACTGACGTGCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa                                                                                                                                   <  2:261098/143‑1 (MQ=255)
       aaCTGACGTTCACGACGACGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACt                                                                                                                                 <  2:713906/143‑1 (MQ=255)
        aCTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTg                                                                                                                                >  1:716738/1‑143 (MQ=255)
          tGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTAGTCGTGCTCTCCTGTAACAGGCGATGACTGAg                                                                                                                              >  1:882589/1‑143 (MQ=255)
            aggctCACGACGAGGTTGAGCAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt                                                                                                                            <  1:568838/139‑1 (MQ=255)
            aCGGTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt                                                                                                                            <  2:692678/143‑1 (MQ=255)
               ttCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCa                                                                                                                         >  1:682191/1‑143 (MQ=255)
                   cgacgaGTTTGAACAGATTTCCGCTGATGACGGACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCAt                                                                                                                     <  1:343779/143‑1 (MQ=255)
                       gaGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGt                                                                                                                 <  2:629052/143‑1 (MQ=255)
                            tGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGTCGATGCCTGAGCTACACCATGGGTAAGTc                                                                                                            >  2:672810/1‑143 (MQ=255)
                             gAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCa                                                                                                           <  1:822408/143‑1 (MQ=255)
                                 aGATTCCCGCTGATGAGGGACCTGGCGCATCTGACACACCATCGCATGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGt                                                                                                       <  1:302087/143‑1 (MQ=255)
                                   aTTCCCGCTGATGAAGTACCGGACGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATTGGTAAGTCAGCGTcc                                                                                                     <  1:769108/143‑1 (MQ=255)
                                       ccGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCCTGTAAACGGCGATGACTGAGTTGCACCCTGGGGAAGTCAGCGGCCAGTc                                                                                                 >  1:258933/1‑143 (MQ=255)
                                                 aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa                                                                                       >  2:815249/1‑143 (MQ=255)
                                                 aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATACATGCTCTCCTGTAACAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa                                                                                       >  1:804794/1‑143 (MQ=255)
                                                  gTACCGGGCGCAGCAGACACACCATCGGCTGTAGCGCAGCTTCACTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAg                                                                                      <  1:890699/143‑1 (MQ=255)
                                                   tcccgcgggcagcaGACACACGATCGCGTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGa                                                                                     <  2:412264/135‑1 (MQ=255)
                                                   tACCGGGGGCAGCAGACACGCCAGCGCCTGTAGCGCAGCTTCACTTCCTGTGTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTACCAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTACAGTCTTTCTTCGCAGa                                                                                     <  1:505030/143‑1 (MQ=255)
                                                       gggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAgg                                                                                 >  2:805686/1‑143 (MQ=255)
                                                       gggCGCAGCAGACACACCATCGCCTGTACCGCAGCGTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTCACAGCCGATGACTGCGCTGCACCACGGGTCAGCCAGCGGCCAGCCTTTCCGCGCAGATAgg                                                                                 >  1:848216/1‑143 (MQ=255)
                                                        ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGt                                                                                <  1:464837/143‑1 (MQ=255)
                                                        ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGGTGCACCATGGGTAAGTCAGCGTCCAGTGTGTGTGCGCAGATAGGt                                                                                >  2:430692/1‑143 (MQ=255)
                                                          cgcAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGttt                                                                              >  2:651758/1‑143 (MQ=255)
                                                               aagACACACCATCGCCTGGAGCGCAGCTTCACGTTCTGTTGCAGAAAGTGCCGGATTATGCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAt                                                                         <  2:263892/142‑1 (MQ=255)
                                                                 gACACCGCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATgg                                                                       <  2:95691/143‑1 (MQ=255)
                                                                 gACACACCTCCGCCTGTAGTGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGGCTTTCTGCGCAGATAGGTTTTTGATgg                                                                       <  1:564083/143‑1 (MQ=255)
                                                                             ccTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTCGTGCGCAGATAGGTTTGTGGTGGGGaaagaagggt                                                           >  1:498170/1‑136 (MQ=255)
                                                                               tGTAGCGTAGCTTTACTTTCTGTTTCAGAAAGTGGCGGATTATTCATGGTCTCCTGTAGCAGGCGATGACTGAGTTGGACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTc                                                         <  2:803595/143‑1 (MQ=255)
                                                                                gTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTcc                                                        <  2:716738/143‑1 (MQ=255)
                                                                                   gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAGGGGGAGAATATTGTTCcagc                                                     >  2:519954/1‑143 (MQ=255)
                                                                                   gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGCTTTTGATGGGGAAAATATTGTTCcagc                                                     >  1:260750/1‑143 (MQ=255)
                                                                                    cgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCcagaa                                                    >  1:85774/1‑141 (MQ=255)
                                                                                      cAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTGGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCaga                                                  <  2:118345/143‑1 (MQ=255)
                                                                                           tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg                                             >  2:162463/1‑143 (MQ=255)
                                                                                           tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg                                             <  2:712447/143‑1 (MQ=255)
                                                                                           tCACTTTCTGTTTCAGAAAGTGCCGGAGTATTCATGCTCTCCTGTAACAGGCGATGACTGAGATGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg                                             <  2:712459/143‑1 (MQ=255)
                                                                                             aCTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg                                           <  2:824001/143‑1 (MQ=255)
                                                                                             aCTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg                                           <  2:159774/143‑1 (MQ=255)
                                                                                              gtttGTGTTTCAAAAAGTGCCGGAGTATTCATGTTCTGCTGTAACAGGCGATGACTGAGTTGCACTATGGGTAAGTCAGCGGCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTgg                                          <  1:830304/142‑1 (MQ=255)
                                                                                               tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAACATATTGTTCCACCAGAGCGCGTGGc                                         >  1:288327/1‑143 (MQ=255)
                                                                                               tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGc                                         >  2:180085/1‑143 (MQ=255)
                                                                                                  cTGTTTCAGGAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCaaa                                      <  1:450521/143‑1 (MQ=255)
                                                                                                     tttCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCCGCAGAGTGCGGGGCAAAAGt                                   >  1:239640/1‑143 (MQ=255)
                                                                                                          gAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCCGCTAGGGTTGTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAGAGGAATGa                              >  1:546493/1‑143 (MQ=255)
                                                                                                           aaaGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGCTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGaa                             >  1:40758/1‑143 (MQ=255)
                                                                                                                 gctgATTATTCATGCTCGCCTGTACCAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGCCCACCCTTTCTGCGGAGATATGTGTTTGAGGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt                       <  1:151415/140‑1 (MQ=255)
                                                                                                                 ccggcgaattCATGCTCTCCGGTAACACGCTGTGAGTGGGTGGCACCATGAGTAAGGCAGCGCCCAGTCTCTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt                       <  2:463158/136‑1 (MQ=255)
                                                                                                                    gATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGGTTTa                    >  1:375594/1‑143 (MQ=255)
                                                                                                                     attattCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTag                   <  2:444477/143‑1 (MQ=255)
                                                                                                                         gtCATGCACTCCTGTAACAGGCGATGACTGAGTTGCACCATGAGTAAGTCAGCCTCCAGTCTTTCTGCGCAGATACGGTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTagaaga               <  2:682191/142‑1 (MQ=255)
                                                                                                                          tCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGAc              >  1:330966/1‑143 (MQ=255)
                                                                                                                              gCTCTTCTGTAACAGGCGAGGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGTTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCt          <  2:226553/143‑1 (MQ=255)
                                                                                                                                tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTGTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTGCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGTTTGAGCAGACTCCTGc        >  1:312785/1‑143 (MQ=255)
                                                                                                                                tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAACTATTGTTCCGGCAGCGTGCGTGGCAAAAGTAATGAAATCTGTTTACAAGACTCCTGc        >  2:372019/1‑143 (MQ=255)
                                                                                                                                  ggctccaaCAGGCGCTGACTGAGGTGGACCATGGGTAAGTCAGCTTCTAGTCTTTCTGCGCAGATAGGTTTTTGGTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGCCTCCTGCCa      <  1:519532/137‑1 (MQ=255)
                                                                                                                                     tGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGACGACTCCTGCCAGTa   >  1:700723/1‑143 (MQ=255)
                                                                                                                                      gTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTATTTCTGCGCAGATAGGATTTGGACGGGGAAAATATTGTTCCAGCCGAGTGCGTGGCATAAGTAATGAACTCGGTATAGCAGACTCCTGCCAGtca  >  1:436682/1‑141 (MQ=255)
                                                                                                                                        |                                                                                                                                            
TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA  >  NC_000913/1446684‑1446960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.