New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2662306 =	NA (NA)	10 (0.190)	3/278	8.2	NA	intergenic (‑177/+275)	iscR/trmJ	isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
	?	NC_000913	= 2662578	NA (NA)					intergenic (‑449/+3)	iscR/trmJ	isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.

TGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGG  >  NC_000913/2662437‑2662713                                                                                                                                              |                                                                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                                                        <  2:746149/143‑1 (MQ=17)   ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTGTGGTCACTGTCGGCCTGATGAGACGCAATGCGCGGCGCGTCAGGCAGCGGCtct                                                                                                                                      >  2:691372/1‑141 (MQ=11)   ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCCTCCGGCAACGGcggc                                                                                                                                      >  2:689571/1‑140 (MQ=9)   ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt                                                                                                                                      >  2:221859/1‑143 (MQ=31)    tCATTGTAAGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCTTCCCTACTGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                                                                                                     <  2:574285/143‑1 (MQ=11)       cgggaGGCCTGGGAGGACGCATGACGTGGCGCTTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAGCCGCCCTACGGTTCTGGTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                                                                                                  <  1:123417/139‑1 (MQ=11)        tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                                                                                                 <  2:755854/143‑1 (MQ=33)        tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGATGCGGCGTTAACGCCTAATCCGCGCTACGGTTATGGTCACTATAGCCCTGATAACAGGCCTTCCGCGTCGCCTCCGCCACCCGCGGTTAtcc                                                                                                                                 >  1:350759/1‑141 (MQ=2)              ccTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATGACGCGTCGCATCAAGCAACGGCTGTTGTTCGGCCtt                                                                                                                           >  2:671668/1‑143 (MQ=255)              ccTGATAAGACGCATGACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                                                                                           <  2:783678/143‑1 (MQ=38)               cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                                                                                                          >  2:834685/1‑143 (MQ=39)                   tacgacccgttACGCCTCGCATCAGGCCACGGCTGTCGGACGCGGCGTGAACGCCTTCTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                                                                                                      <  1:161303/134‑1 (MQ=14)                     aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTCTTCGACCTTGTTACCt                                                                                                                    >  2:289550/1‑143 (MQ=255)                       aCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt                                                                                                                  <  2:672497/143‑1 (MQ=255)                          ctttACGCGTCGCATCAGGCAACGGCTGGCGGATGGGGCGTGAACGCCTTATCCGGCCTACGGTTCTGTTCCCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt                                                                                                               <  2:128681/141‑1 (MQ=255)                            ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                                                             >  2:467231/1‑143 (MQ=255)                            ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                                                             <  2:444152/143‑1 (MQ=255)                             tACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                                                                                            <  1:435728/143‑1 (MQ=255)                              aCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                                                                                           <  1:213995/143‑1 (MQ=255)                                     gcatgacgtaaCGGCTCTCGCATGCGTCGTGAACGCCTTAGCCGGCCTACGGTTCTATTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCaa                                                                                                    <  1:599305/134‑1 (MQ=18)                                     gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCGTTATCCGACCTGCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTCTTCTGCTGCTctc                                                                                                    >  2:387813/1‑141 (MQ=255)                                      caccAGGCAACGGCTGTCGGAGGCGGCGGGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAAt                                                                                                   <  2:37661/140‑1 (MQ=255)                                       aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                                                                                                  <  2:180522/143‑1 (MQ=255)                                          aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCCACGGATGAAACCGTGGCTTGCTACCTCTATTCCGCCGCTCAAtcaaa                                                                                               >  1:189603/1‑139 (MQ=11)                                          aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                                                               <  2:593648/143‑1 (MQ=255)                                              aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa                                                                                           <  2:536774/143‑1 (MQ=255)                                               aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg                                                                                          <  1:878858/143‑1 (MQ=255)                                               aCGGCTGTCGGATGCGGCGTAAACGCCCTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATATGACGCATTACGCGTCGGATCGGGCAACGGCTGCTATTCGGGTGTGTTAACTTTATGCTGGTGCTTAAGGGAAGcccg                                                                                          >  2:318669/1‑141 (MQ=14)                                                 ggCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGAGTCGCTTACTTGACCATCCCCCCTTCGGCCTTGTTACCTTTCTTCTGCTGCTCAATAGAAGCCAGaa                                                                                        >  2:208659/1‑143 (MQ=14)                                                                    aaCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa                                                                     <  2:874121/143‑1 (MQ=255)                                                                       gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTc                                                                  <  1:558403/143‑1 (MQ=255)                                                                         cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACCGCTGTTATTCGGCCTTGTTACCTTTATTCAGCTGCTCAATAGAAGCCAGAATCCCGCGCGCGATATTAAACTCCt                                                                >  1:870809/1‑143 (MQ=25)                                                                            aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGAGATTCAACTCCTGGc                                                             >  2:553383/1‑143 (MQ=255)                                                                             tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGAGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTCACCTTTATTCTGCTGCCCAATAGCAGCCAGAATCCCGCGCAGGCTATCCAACAccgcgcg                                                            >  1:353934/1‑138 (MQ=21)                                                                                       ggTTCTGTTCACTGTAGGCTTTAGAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc                                                  <  1:834685/143‑1 (MQ=255)                                                                                       ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc                                                  <  2:111607/143‑1 (MQ=255)                                                                                             gttcgatttAGGCCTGATAAGGCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTGATTCTGCTGCTCAATATAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACgg                                            <  1:856831/135‑1 (MQ=38)                                                                                              ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACggg                                           >  1:305970/1‑143 (MQ=255)                                                                                                        gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACg                                 >  1:709502/1‑143 (MQ=255)                                                                                                               aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAt                          <  2:810394/143‑1 (MQ=255)                                                                                                               aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAACCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAt                          <  2:447389/143‑1 (MQ=255)                                                                                                                  aCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTa                       >  1:485225/1‑143 (MQ=255)                                                                                                                       ttACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtcat                  <  2:800377/143‑1 (MQ=255)                                                                                                                         aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACACATTGCCGCGCTGGCTCGCACGGGTAAACAGACGGCGCAATTTATtcatca                <  2:174645/143‑1 (MQ=255)                                                                                                                          cgcgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCAc               <  1:467231/143‑1 (MQ=255)                                                                                                                            cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACCGACGGCGCAATTTAATCATCAccc             >  1:819393/1‑142 (MQ=255)                                                                                                                            cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCt             <  1:798393/143‑1 (MQ=255)                                                                                                                                  aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCCGCTGCTCCATAGCAGCCAGCATCCCACGCAGGCTCTCCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGCAGGCGCAATTTACTCATCACCTCCCCCg       >  1:241036/1‑143 (MQ=255)                                                                                                                                      ggCAACGGCTGTTATTCGGCATTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATg   <  1:358627/143‑1 (MQ=255)                                                                                                                                       gCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATgg  >  2:370057/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                        TGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGG  >  NC_000913/2662437‑2662713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.