New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2662306 =NA (NA)10 (0.190) 3/278 8.2 NA intergenic (‑177/+275) iscR/trmJ isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
?NC_000913 = 2662578 NA (NA)intergenic (‑449/+3) iscR/trmJ isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.

TGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGG  >  NC_000913/2662437‑2662713
                                                                                                                                             |                                                                                                                                       
tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                                                        <  2:746149/143‑1 (MQ=17)
  ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTGTGGTCACTGTCGGCCTGATGAGACGCAATGCGCGGCGCGTCAGGCAGCGGCtct                                                                                                                                      >  2:691372/1‑141 (MQ=11)
  ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCCTCCGGCAACGGcggc                                                                                                                                      >  2:689571/1‑140 (MQ=9)
  ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt                                                                                                                                      >  2:221859/1‑143 (MQ=31)
   tCATTGTAAGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCTTCCCTACTGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                                                                                                     <  2:574285/143‑1 (MQ=11)
      cgggaGGCCTGGGAGGACGCATGACGTGGCGCTTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAGCCGCCCTACGGTTCTGGTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTAtt                                                                                                                                  <  1:123417/139‑1 (MQ=11)
       tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                                                                                                 <  2:755854/143‑1 (MQ=33)
       tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGATGCGGCGTTAACGCCTAATCCGCGCTACGGTTATGGTCACTATAGCCCTGATAACAGGCCTTCCGCGTCGCCTCCGCCACCCGCGGTTAtcc                                                                                                                                 >  1:350759/1‑141 (MQ=2)
             ccTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATGACGCGTCGCATCAAGCAACGGCTGTTGTTCGGCCtt                                                                                                                           >  2:671668/1‑143 (MQ=255)
             ccTGATAAGACGCATGACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                                                                                           <  2:783678/143‑1 (MQ=38)
              cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                                                                                                          >  2:834685/1‑143 (MQ=39)
                  tacgacccgttACGCCTCGCATCAGGCCACGGCTGTCGGACGCGGCGTGAACGCCTTCTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                                                                                                      <  1:161303/134‑1 (MQ=14)
                    aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTCTTCGACCTTGTTACCt                                                                                                                    >  2:289550/1‑143 (MQ=255)
                      aCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt                                                                                                                  <  2:672497/143‑1 (MQ=255)
                         ctttACGCGTCGCATCAGGCAACGGCTGGCGGATGGGGCGTGAACGCCTTATCCGGCCTACGGTTCTGTTCCCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt                                                                                                               <  2:128681/141‑1 (MQ=255)
                           ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                                                             >  2:467231/1‑143 (MQ=255)
                           ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                                                                                             <  2:444152/143‑1 (MQ=255)
                            tACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                                                                                            <  1:435728/143‑1 (MQ=255)
                             aCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                                                                                           <  1:213995/143‑1 (MQ=255)
                                    gcatgacgtaaCGGCTCTCGCATGCGTCGTGAACGCCTTAGCCGGCCTACGGTTCTATTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCaa                                                                                                    <  1:599305/134‑1 (MQ=18)
                                    gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCGTTATCCGACCTGCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTCTTCTGCTGCTctc                                                                                                    >  2:387813/1‑141 (MQ=255)
                                     caccAGGCAACGGCTGTCGGAGGCGGCGGGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAAt                                                                                                   <  2:37661/140‑1 (MQ=255)
                                      aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                                                                                                  <  2:180522/143‑1 (MQ=255)
                                         aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCCACGGATGAAACCGTGGCTTGCTACCTCTATTCCGCCGCTCAAtcaaa                                                                                               >  1:189603/1‑139 (MQ=11)
                                         aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                                                               <  2:593648/143‑1 (MQ=255)
                                             aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa                                                                                           <  2:536774/143‑1 (MQ=255)
                                              aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg                                                                                          <  1:878858/143‑1 (MQ=255)
                                              aCGGCTGTCGGATGCGGCGTAAACGCCCTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATATGACGCATTACGCGTCGGATCGGGCAACGGCTGCTATTCGGGTGTGTTAACTTTATGCTGGTGCTTAAGGGAAGcccg                                                                                          >  2:318669/1‑141 (MQ=14)
                                                ggCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGAGTCGCTTACTTGACCATCCCCCCTTCGGCCTTGTTACCTTTCTTCTGCTGCTCAATAGAAGCCAGaa                                                                                        >  2:208659/1‑143 (MQ=14)
                                                                   aaCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa                                                                     <  2:874121/143‑1 (MQ=255)
                                                                      gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTc                                                                  <  1:558403/143‑1 (MQ=255)
                                                                        cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACCGCTGTTATTCGGCCTTGTTACCTTTATTCAGCTGCTCAATAGAAGCCAGAATCCCGCGCGCGATATTAAACTCCt                                                                >  1:870809/1‑143 (MQ=25)
                                                                           aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGAGATTCAACTCCTGGc                                                             >  2:553383/1‑143 (MQ=255)
                                                                            tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGAGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTCACCTTTATTCTGCTGCCCAATAGCAGCCAGAATCCCGCGCAGGCTATCCAACAccgcgcg                                                            >  1:353934/1‑138 (MQ=21)
                                                                                      ggTTCTGTTCACTGTAGGCTTTAGAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc                                                  <  1:834685/143‑1 (MQ=255)
                                                                                      ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgc                                                  <  2:111607/143‑1 (MQ=255)
                                                                                            gttcgatttAGGCCTGATAAGGCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTGATTCTGCTGCTCAATATAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACgg                                            <  1:856831/135‑1 (MQ=38)
                                                                                             ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACggg                                           >  1:305970/1‑143 (MQ=255)
                                                                                                       gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACg                                 >  1:709502/1‑143 (MQ=255)
                                                                                                              aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAt                          <  2:810394/143‑1 (MQ=255)
                                                                                                              aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAACCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAt                          <  2:447389/143‑1 (MQ=255)
                                                                                                                 aCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTa                       >  1:485225/1‑143 (MQ=255)
                                                                                                                      ttACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtcat                  <  2:800377/143‑1 (MQ=255)
                                                                                                                        aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACACATTGCCGCGCTGGCTCGCACGGGTAAACAGACGGCGCAATTTATtcatca                <  2:174645/143‑1 (MQ=255)
                                                                                                                         cgcgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCAc               <  1:467231/143‑1 (MQ=255)
                                                                                                                           cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACCGACGGCGCAATTTAATCATCAccc             >  1:819393/1‑142 (MQ=255)
                                                                                                                           cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCt             <  1:798393/143‑1 (MQ=255)
                                                                                                                                 aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCCGCTGCTCCATAGCAGCCAGCATCCCACGCAGGCTCTCCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGCAGGCGCAATTTACTCATCACCTCCCCCg       >  1:241036/1‑143 (MQ=255)
                                                                                                                                     ggCAACGGCTGTTATTCGGCATTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATg   <  1:358627/143‑1 (MQ=255)
                                                                                                                                      gCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATgg  >  2:370057/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                       
TGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGG  >  NC_000913/2662437‑2662713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.