Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,522,373 | A→G | 14.5% | L126P (CTC→CCC) | hofM ← | DNA catabolic putative pilus assembly protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,522,373 | 0 | A | G | 14.5% | 165.0 / 2.3 | 71 | L126P (CTC→CCC) | hofM | DNA catabolic putative pilus assembly protein |
Reads supporting (aligned to +/- strand): ref base A (11/47); new base G (9/3); total (21/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.32e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCTAGTCATCCCCACCGCCAGTTTGCG‑CCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAGCTGCTGCGCATCAACAATCCGCCC > NC_000913/3522137‑3522611 | ggcgaggcATGCCCACCACCAGTTTGCG‑CCCCCCGCTAAAGGCCGTCGGCAAACGCCACTGTTCGTTATCACGCAAGGCCAGACATTGCTGATGAAAAGGTAAAAAAGGCAGGAATCGCTGTAAGGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACtgagt < 2:852028/232‑1 (MQ=255) cccttttGCGCCCCCCGGCCTTGGCGGGGCGCCCCCAACCACTGGTCGTTATCACGCCAGGCCAGACATTGCTGATGGGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATc < 1:959896/235‑1 (MQ=255) cAGTTTGCG‑CCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGACGGGACTGGGG‑GAGTCTTCCGCTG‑AATCGa > 2:267282/1‑239 (MQ=255) aGTTTGCG‑CCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGGCCTGGG‑GAGTCTT‑TGCTGTAATCGaa > 2:245949/1‑239 (MQ=255) gcccccccAGGTATAGGGCGTCGCCCACAGCCACTGTTCGTTAGCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCa < 2:731208/236‑1 (MQ=255) cg‑cCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGGGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGAGTGAGT‑GAGTCTT‑CGCTGTACTCGAAGC‑GCac > 2:883803/1‑238 (MQ=255) g‑cCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAgg < 2:377804/239‑1 (MQ=255) ccagcttaaggcggTCGCCCAAAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTTATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGt < 2:626964/226‑1 (MQ=255) cAGCTATAGCGGGCGGACCACAGCTCATGTTCGTTGTCACGCCAGGCCAGACATTGCTGGTGAGAAGGTAAAGAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGAT‑‑CGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCGTTGCTGT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 2:236068/239‑1 (MQ=255) cAGCTATAGCGGCTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTc < 2:685858/239‑1 (MQ=255) cAGCTACAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCCGACATTGCCGATGAGAAGGTAAAAAAGGCAGGAATCGATGTAATGCACTGGCATCCGGTGGGATCGCGCTCACAC‑AAACACGCACCCTTTCGGCCCTAGTAACCAGCTTTG‑CCAGCCCTTTACGTT‑GCCCGGCAGCCACTATACTGACCGAACTGCGA‑CAGCGTT‑CGATGTAATCGAAac‑ggaacaggga > 1:394041/1‑230 (MQ=255) gttctaGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGGCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 1:245949/235‑1 (MQ=255) ggtataGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 2:774552/237‑1 (MQ=255) gctcaaggggctCGCCCAAAGCCACTGTTCGTTATCCCGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCCGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 2:407482/228‑1 (MQ=255) gcctatgccggTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCTCTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 2:555877/229‑1 (MQ=255) gCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCg < 2:604054/239‑1 (MQ=255) taGCGCGTCGGCACCAGCCACTGTTCGTTATCGCGCCAGGGCAGACATTGCTGATGAGAAGGTAAAAAAGGAAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATc < 2:667918/239‑1 (MQ=255) aGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGG‑GAGTTTT‑CGCCGTAATccatggcccggggaaccggacc > 2:1144541/1‑217 (MQ=255) cgTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGGACGAGT‑GAGTCTT‑CTCTGTATTCGGAgg‑gccaggggctcgggtccaaa > 2:1225075/1‑220 (MQ=255) tCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGGGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑CCGCGGCAGTCCCGTTTTAGCCGGGCCTAGGTGGCGTC‑T‑CCCTGTAATCCAAGC‑CCCGGGAGACCggggcccaaacc > 1:592899/1‑229 (MQ=255) tCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGGAG‑GAGTCTT‑CGCCTTAATCCGACG‑GCAGGGGGTCCGGATcccaaatc > 2:116714/1‑233 (MQ=255) tCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGG‑GAGGCTT‑CCCTGTAATCGAAGC‑GCAGGGAGGCCGGAtgccaatcc > 2:175437/1‑231 (MQ=255) cggTTCGTTAACACGCCCGGCCAGACATTGCTGAGGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCa < 2:875270/237‑1 (MQ=255) cTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCa < 2:733016/239‑1 (MQ=255) cGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGAGCGGGGG‑GAGTCTT‑TCCTGGTATAGCAGCGGCAGGGGGCCCGGACCCaatcccactccccggccccctc > 1:1024002/1‑217 (MQ=255) cGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTAACGTTATAGGCGGGCCAGGGG‑GAGTTCT‑CTCTGTAATCGAAGC‑CCCGGGGGACCGGAACCCCATCCaaccccgggcgccacct > 2:666593/1‑222 (MQ=255) cACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCCTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGCATGAGG‑GAGTCTT‑TTCTTTTATCCAAAC‑GCAGCGGGTCCGGGACCCTATCCCGCTCCCCGGCCCACGTCCCtca > 2:712081/1‑236 (MQ=255) cGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGCCTGGGT‑GAGTCTT‑CCGTGTAATCTGAAA‑GCCAGGAGACCCGTTCCATATCCAACTCGCCGGCCCCCGGCCCTc‑aca > 2:573976/1‑238 (MQ=255) cGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑TGCTGTAATCGTAAC‑GCAGGGGGGCCGGAACCCTATCCCGCTCCCCGGCCATCCTCCCttcca > 2:871081/1‑234 (MQ=255) gACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTG‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTc < 2:869939/208‑1 (MQ=255) ttGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCt < 2:1307057/239‑1 (MQ=255) tGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGGGG‑GAGTTTT‑CGCTGTCATTGAAGG‑GCAGGGAGTCCGGGTCCCTATCCAGCTCCCGGGCCCACGTCCCTG‑ACAGCCCAGCCG‑GTTTCt > 2:392862/1‑238 (MQ=255) gagaAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGGCTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGGTCCATATCCCGCCTGCCGGCCCTCCTCCCCG‑ACACCCAGTCCG‑GTTGCTccccccc > 2:573283/1‑234 (MQ=255) aaaaaaGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTAACAT‑GAACCCGCATCCTTTCTGCCAGAGTAAGCCGCGTTG‑CCAGCTCGTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAggg < 2:517791/238‑1 (MQ=255) gatgtgccctcggaaTGCACTGGCCCACTGGGTGATCGCGGAC‑CATGGATCCAGGAACCTTTCTGCCAGAGTAAGC‑GCGTTGTCGAGCTCTTTGATGT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCGCGCGGGCCATCGTCCCGG‑ACTGCCGGGCCG‑TTGGCTCCCGCTCTCCAACGGACAT‑CGAc < 1:267282/225‑1 (MQ=255) cAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGGCTGAGG‑GGGTCTT‑CGCTGTAATCGAAGC‑GCCGGGAGTCCGGATCCATATCCCGCTCCCGGGCCCTCGTCCCTGCACA‑CCAGGCCG‑CTTGTTCCCCCTCACCCCGGGGCAT‑CGACg > 2:668786/1‑239 (MQ=255) cAGGAATCGCTGGAATGCACGGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGa < 2:542600/237‑1 (MQ=255) ggAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACgg < 2:263262/238‑1 (MQ=255) gTAATGCTCTGGCAGCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAAt < 2:1238275/239‑1 (MQ=255) aaTGCACTGGCATCCGGGTGGATCGCGCTCACAT‑GAACCCGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGATTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGa < 2:59254/239‑1 (MQ=255) aTGCAATGGCATCCGGGGTGATCGCGCTCACAT‑GAACCCGCAACCTTTCTGACAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGAc < 2:790522/239‑1 (MQ=255) gCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGTCTGAGT‑GAGTCTT‑TCCTGTCATCGAAGC‑GGACGGGGTGCGGAGCCCTATTCAGCTCGCGGGCCATCGTCCCCT‑CCAGCCCCGCCGTTTTGCCCCCCCCCCCAAAGGAACAC‑CCAGGGGCGGGGaaaaaacccgtgaa > 1:1142378/1‑228 (MQ=255) ggttaccgcgCTCACAT‑TAACACGCAACTTTTCGGCCAGAGGAAGCAGCGTTG‑CCAGCGCTGTGCTTT‑GCGCGGCAGTCTCGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCGGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGa < 1:668786/232‑1 (MQ=255) ggtgagcgggcctactggAACACGCAACGTTTAGCCAAGGGGGAGCAGTGTTG‑CCGACGCTTTGCTTT‑GCGCGGCAGGCACGGTATAGGCGGGACGGAGG‑GAGTCTC‑CGCTGTAAGCGAAGC‑GCAGGGAGTCCGGATCCATATACAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGa < 1:1144541/221‑1 (MQ=255) cgcgCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGGTCCATATCCAGCTCGCGGGCCATCCTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CTACGGGGGCGGGAAAGACCGCTGTAATGTGCGAC‑TGGCgg > 2:635952/1‑239 (MQ=255) cgcTCAGAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGa < 2:1142378/239‑1 (MQ=255) cgcTCACAA‑GAACCCGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAAGCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGa < 2:1317461/239‑1 (MQ=255) cgtccccttggaccgaccaCCTTTCTGCCAAGGGAAGCAGGGGTG‑CCAGCTCTTGTCTGT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGa < 1:175437/221‑1 (MQ=255) cTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CTCTGTAATCGAAGC‑GCAGGGGGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCCAGACG‑TTTGCGCCCGCTCACCAAGGGGCAA‑CGCCGGGCGCGGGAATGACCGCTGGAAAGTGGGAC‑TCGCggggga > 2:1325781/1‑236 (MQ=255) cacaT‑GAACCCGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACg < 2:388255/239‑1 (MQ=255) cacaT‑GAACACGCAACCTTTCGGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACg < 2:1321966/239‑1 (MQ=255) acaT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTGG‑CCGTCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGc < 2:458108/239‑1 (MQ=255) aT‑GAACCCGCAACCTTTCTGCCAGGGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCa < 2:592899/239‑1 (MQ=255) gAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTTTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAAc < 2:639641/239‑1 (MQ=255) ccGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCTGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGTTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATaa < 2:1093469/238‑1 (MQ=255) gCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTTGGG‑AAGTTCT‑ATCTGTAAACGAAGC‑GCAGGGGATGCGGGTCCCTATCCCACCGCCGGGGCACCTCCCCCC‑GCAGACAGGGCG‑GTAGCTCCCCCCCCCCACAGGGCATACGACGGGCGC‑GAAAAGAACGATGTGAAGTGCGACGCGCCGGGAAAGGCCaaaaaaaa > 1:464446/1‑233 (MQ=255) ccTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCGCGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGtgat < 2:1305787/239‑1 (MQ=255) agcGTTG‑CCAGCTTGTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTcgc < 2:701994/238‑1 (MQ=255) cGTTG‑CCAGCTCTTTGCTTT‑GCCGGGCAGTCCCGGTATAGGCGGGACTGAGT‑TAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGa < 2:576191/238‑1 (MQ=255) tG‑CCAGCTCTTTGCTGT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTG‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTc < 2:875371/238‑1 (MQ=255) tgcggtctttttggttg‑gcGCGACAGTATCGTTATACGGGGGCGTGGCT‑GAGTCCT‑CTCTGTAATGGAGAC‑GAGGGGAGGCCGGATCCATATCCAGCTCGCGGGCCCTCGTCCCTG‑CCAGACAGTCCG‑TTTGCGCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGAGTCTGCGGCAGTGCGCGAcgc < 1:573283/229‑3 (MQ=255) tgccggcttttgttttggCGCGGAAGTCCCTTTACAGGCGGGACTGGGT‑GGGTCCT‑GGGTTGACTCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGGCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTcc < 1:883803/231‑1 (MQ=255) cccggtctttggcggtgggcgGGAGTCACGGTATAGGCGGAATTTAGT‑GGGTCTT‑CGCTGGAATCGAAGC‑GGAGGGAGCCCGGATCCATATCCAGCTCGCGGGCCATCTTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAG‑CGACGGGCGCGGAAATGACCGCTTTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGGGATGACGCTGCGGCAGTTCGCGACTCCa < 1:1280389/221‑1 (MQ=255) ctctTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGt < 2:456906/105‑1 (MQ=255) tttgcttg‑gcGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTaaca < 2:495105/239‑1 (MQ=255) gtggcttt‑ggCCGGCAGTCACGTTATAGGGGGGACTGAGT‑TAGTCTT‑CGCTGGAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTaaca < 2:57313/236‑1 (MQ=255) tgtgcgtggcgcGGGAGGCACGTTATAGGCGGGACTGAGT‑GAGTCTG‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCGCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTaac < 2:1158053/230‑1 (MQ=255) cAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAg < 2:8272/238‑1 (MQ=255) tCACGTTATAGGCCGGACTGACG‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATAGCCAGCGCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAgctgc < 2:403175/239‑1 (MQ=255) gTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAGctgctg < 2:1008528/237‑1 (MQ=255) tataGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGAcc < 2:38713/141‑1 (MQ=255) ggggCTGGGT‑GAGTCTT‑CGGTGTAATCGGAGC‑GGAGGGGGTCCGGACCCATATCCCGCTCGCGGGCCATCGTCCCGG‑ACAGCCAGGCCG‑GTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAGCTGCTGCGCATcaaca < 1:116714/238‑1 (MQ=255) agt‑gagtCTT‑CGCTGTAACCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAGCTGCTGCGCATCAACAATCCGccc < 2:1024002/239‑1 (MQ=255) | CGCTAGTCATCCCCACCGCCAGTTTGCG‑CCCCCAGCTATAGCGCGTCGCCCACAGCCACTGTTCGTTATCACGCCAGGCCAGACATTGCTGATGAGAAGGTAAAAAAGGCAGGAATCGCTGTAATGCACTGGCATCCGGGGTGATCGCGCTCACAT‑GAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTG‑CCAGCTCTTTGCTTT‑GCGCGGCAGTCACGTTATAGGCGGGACTGAGT‑GAGTCTT‑CGCTGTAATCGAAGC‑GCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG‑ACAGCCAGGCCG‑TTTGCTCCCGCTCACCAAGGGACAT‑CGACGGGCGCGGAAATGACCGCTGTAATGTGCGAC‑TGGCGGGAAACGCCAACATAATGTGATGACGCTGCGGCAGTTCGCGACTCCACGGTAACAACGTTTTAGCCAGCTGCTGCGCATCAACAATCCGCCC > NC_000913/3522137‑3522611 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |