Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 345,302 | C→A | 17.2% | intergenic (+311/‑102) | yahL → / → yahM | uncharacterized protein/uncharacterized protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 345,302 | 0 | C | A | 17.2% | 188.0 / 3.9 | 73 | intergenic (+311/‑102) | yahL/yahM | uncharacterized protein/uncharacterized protein |
Reads supporting (aligned to +/- strand): ref base C (46/13); new base A (5/9); total (51/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.64e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCAC > NC_000913/345063‑345523 | ttttttttttgtttGCCACTTGGCTTTCCACTTTTTTTTTGCCCGATATTTTGTTGGGATCGGAG‑ACCCTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑G‑GGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GAc < 1:1202164/230‑1 (MQ=255) gagttctgtatGCCAACTGGCATTCCATCTCTTGTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAg < 2:1231343/235‑1 (MQ=255) tttatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATTTTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTTGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTTACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAata < 2:784560/237‑1 (MQ=255) tttggcAACCGTCATTCCAGCTTATTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACAATTCGCTGAAAAAAGCACCAGTATGGGTTTC‑GCAGCCATGCCGTGTATAAAAAATGATCTCATTCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑Tg < 1:798118/234‑1 (MQ=255) tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCCTGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑Tg > 2:663971/1‑239 (MQ=255) tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAata‑t > 2:109582/1‑238 (MQ=255) tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAata‑t > 2:1055832/1‑238 (MQ=255) tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑Tg < 2:352806/239‑1 (MQ=255) tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACAAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGCGATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑TTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GCAGGAAAata‑t > 2:1059400/1‑238 (MQ=255) ttccAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGa < 1:186734/228‑1 (MQ=255) tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑TTGGGGTCTTTTC‑GT‑AA‑TTTTCCGCATCGCACCAAAGCCT‑GACAGAAAAAA‑TGcg > 1:352806/1‑238 (MQ=255) tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGa > 2:186734/1‑230 (MQ=255) tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGGGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCAGGTTT‑GT‑GTGGGGCCTTTTC‑TG‑TA‑TCTTACGCATCGAACTCAAGCCT‑CACAGAAAAAA‑TGCt > 1:436389/1‑239 (MQ=255) tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGGTTATCAAAAATGATCTCATGCAGCTGTTTTGT‑GACTGAGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GGGGGGTCTTTTC‑GG‑TA‑TCTTACGCATCCCACTCAACCCC‑GAAAGAAAAAA‑Tgta > 1:1280758/1‑237 (MQ=255) tGCCAACTGGCATTCCATCTCTTTTTCTGCAGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATACAAAATGATCTCATGCAGATGTTTTGT‑AAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GA‑GGTGGGTCTTTTC‑AG‑TC‑TCTTATGCCTCGCACTAAAGCAT‑GCAAGAAACTA‑Tgtt > 2:570650/1‑237 (MQ=255) ccAACTGGCATTCCATCCTTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGt < 2:555196/239‑1 (MQ=255) cTGGCATTCCATCTTTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAata < 1:790654/229‑1 (MQ=255) cTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAata > 2:790654/1‑229 (MQ=255) cTGCCACTCAATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGAGGTTTC‑GCCGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAAACATAATTCCA‑TCACGTTT‑GG‑TTGGGGCCTTTTC‑TG‑TA‑ACTTAGCCATACCACTAAAACCT‑ACAAGaaaaaaagcgtaaga > 1:849977/1‑227 (MQ=255) ttttttCGCTTTTTTTTTTTTGTTAT‑GGCGCACACTTCGTTTAAAAAAGCACTAGT‑GGGGTTTCTCCAGCCATGCGGTGTATAAAAAATGATCTCTGGCATATGTTTTGT‑GAAGGTGTTGTTTGACTTTAATATGAAAAAAATCATAATTCCA‑TAATGTTT‑GT‑GTGGGGTTTTTTC‑TG‑TA‑TCTTCCGCACCGCACTCAAGCCT‑AACAAAAAATA‑TGTTGTAAGCCACATATCAAAAc‑cc < 1:1055832/239‑1 (MQ=255) ttttCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCg > 2:702989/1‑238 (MQ=255) ttCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCa > 2:1110004/1‑239 (MQ=255) aTCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCa > 2:861301/1‑239 (MQ=255) aTCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GAAAGAAAATA‑TGCTGTACGGCTCATATCAAAAA‑CCGCCATTAGCTCATCTGGCAGAGCa > 2:836255/1‑239 (MQ=255) tctccgataaaaaaaGCCCCAGTTGTGGTTTC‑GCAGCAATGCGGTTAAAAAAAAATGATCTCATGCAG‑TTTTTTGTGGAATGTGTTGTTTGACATTAATATAAAAAAATTAATAATCCCA‑TCATGTTT‑GG‑TGGGGGTTTTTTC‑TG‑TA‑TTTTACGCACCGCACTCAAGCCT‑AACAAAAAATA‑GGTTGTAAGGTTAAAAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAAc < 2:487286/230‑1 (MQ=255) cGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GCCAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAagag > 2:288317/1‑224 (MQ=255) cGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAgg > 2:494063/1‑239 (MQ=255) gataaaaaaaGCACAGGTGGTGTTTTC‑GCAGCAGGGCGGTGAAAAAAAAATAATCTCAGGAAGGTTTTTTGG‑AATTTTGTGGGTTGACATTCATAAAAAAAAAATCATAATCCAA‑TCATGTTT‑GG‑GTGGGTTTTTTTC‑TT‑TA‑TTTTCCGCATCGCACTAAACCCT‑GAAAAAAAATT‑TGCTGTAAGGTTAAAAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGa < 2:1091340/235‑1 (MQ=255) cACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATgg > 2:121147/1‑239 (MQ=255) cACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGACGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGAATgg > 2:1000481/1‑239 (MQ=255) tC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAg > 2:28941/1‑238 (MQ=255) aTGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAACTCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑ACTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTACGACTCATATCATAAA‑CCGCCATTAGCCCAACAGGAAGAGCAAACGACAACCAGAATTGTTTTATGGTACGGGGTCAGCGGACCCGCTGGCGGGCCCACTTTTCa > 1:791503/1‑239 (MQ=255) aTGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCa > 2:781792/1‑239 (MQ=255) aTGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑ACGCCATTAGCTCATCAGGAAGAGCAGAGAACAAACAGGATTATTCAATGGTACGGAGTTGGAGACCTCGGAGGGGGCACAACttttgg > 1:561249/1‑237 (MQ=255) gATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaa > 2:1212210/1‑239 (MQ=255) gATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaa > 2:660982/1‑239 (MQ=255) gATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCATCGATGGCGGGCCAACTTTTCaaa > 2:634772/1‑239 (MQ=255) gATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGAACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaa > 2:745367/1‑239 (MQ=255) gATCTCATGCAGATGTTTTGT‑GAATGTGCTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCCCTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGAATGGTATGGGGTTCGAGGCCGCGATGGACGCACAACTTTTCaaa > 1:67209/1‑239 (MQ=255) acctttgggagtttttttGG‑GAATGGGTGGGTTGACATTCAAATAAAAAAAATCATAACCCCA‑TC‑TGTTTGGT‑GGGGGGTTTTTCC‑TG‑TA‑TCGTACGAAGCCCACCAAATCCA‑TAAAAAAAATT‑TGCTGTAGGGCTAAAAACAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaaa < 2:567879/225‑1 (MQ=255) aggaagttGTTTGGT‑AAATGGTTTGGTTGACATTAATATGAAAAAAATCATAATTCCA‑TATTGTTG‑GT‑GTGGTGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GAAAAAAAATA‑TGCGGTAAGGCTAATATCAAAAC‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtctt < 2:149535/232‑1 (MQ=255) aTGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTAGGGAACGGGGTTCGAGGCCTCGATGCAGGTCCAACTTTTCAAAACTCTTCTGaa > 2:1223663/1‑238 (MQ=255) aTGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTAC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATCTCACAAC‑CCGCCATTAGCTCATCAGGTAGAGCAGACGCAAACCAGGATAGTTGTATGGAACGGGCTTGGAGGACTCGATGGCGGTCCCACTTTTTAAAACACTTCTGAAt > 1:567879/1‑239 (MQ=255) tgtgt‑gAAGTTGTGGTTTCACATTAGAATAAAAAAACTCAT‑ATACCACTTATGTGT‑GT‑GGGGGGTCTTTCC‑AG‑TA‑TCGTACGCACCTCACTCAAGCCT‑GACAGAAAATA‑TGGTGTAAGGCCAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTACAAAACTCTTCTGAATCAGa < 2:78058/237‑1 (MQ=255) ttaaaTGTGGTGGTTATAATTAATAAAAAAAAAATAAT‑ATTCCA‑TTTTTGTT‑GT‑TGGGGGTTTTTTT‑TGTTT‑TTTTCCGCCTCGCACTCAACCCA‑AAAAAAAAATA‑TGCTGAAAGCCAAAAAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcc < 2:1249930/236‑1 (MQ=255) aaTGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCATGAAGAGCAGACGTCAACCAGGATTGATGTATGGTACGGGGATCGAAGCCCAGATGGCGGCCCAACTTTTAaaaaactatcgtaaacaggaacacc > 1:638031/1‑218 (MQ=255) aaTGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGCATCAGATCCCCt > 2:1144980/1‑239 (MQ=255) aaTGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGAGGGCGGCCCAACTTTTCAAAAACATTCTGAATAAGATCCCCt > 1:459055/1‑239 (MQ=255) tttgttctattttttataAAAAAAACTATAACCCCA‑TCTGGTTT‑G‑‑GGGGGGTTTTTTCTTG‑TA‑TCTGACACA‑CCAACACAAACCTAGAAAAAAAATA‑TGAGAAAGGGCACAAATAAAAAT‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTtattat < 1:660982/225‑1 (MQ=255) tggactttaaaaaaaaaaaaaTATTATGTCCA‑TCGTGTTG‑GT‑GGGGGTTCTTTTC‑TG‑TA‑TCTTCCGCCCCGCACTCAAGCCG‑AAAAAAAAATT‑TGTTGTGAGGCCAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatcat < 2:776416/224‑1 (MQ=255) aaaaaaaTCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTTTTGTATGGTACGGGGTTCGAGGTCTCGACGGCGGCCCAACTTTTCAAAAATATTCTGAATACGATCCCCTTATTCTCATCCCTGCAAAGGGGa > 2:933934/1‑238 (MQ=255) aaaaaaaTCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATACCTGCAAAGTGGaa > 2:1240350/1‑239 (MQ=255) aaaaaaaTAAAAATCCCA‑TGTTTTTG‑GG‑GGGGGTTTTTTTA‑TG‑TA‑TCTCACGCATCGCACACAAGCCT‑GACAAAAAATA‑GGCTGAAGGGCTAATAACAAAGC‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGaa < 2:496371/239‑1 (MQ=255) aaaaaTCATAATTCCA‑TCATGTTT‑GG‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGCCGACAACCAGGATTGTTGAATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTTTTATCATCCCTGCAAAGTGGcaca > 2:1254052/1‑239 (MQ=255) aTTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGTCGGTCCAACTTTTCAAAACTCTTTTGATTCAGATCCCCTTTTTATCATTCCTGCAAAAGGGAAAAtttctata > 1:496371/1‑231 (MQ=255) tatatgtttt‑GG‑GTGGGTTTTTTTC‑GT‑TA‑TCTAAAGCATCGCACTCAAGCCT‑ACAAGAAAATA‑GGCGTGAAGCTTCTTTATAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCTACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTgg < 2:397666/232‑1 (MQ=255) tcatGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCt > 1:129795/1‑239 (MQ=255) ttt‑GTGGTGGGGTGTTTTC‑TG‑TATTCTCCCGTA‑CGCACCCAAGCCC‑GAAAAAAAATATTGGTG‑AAGGCCTAAATAAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTAtt < 2:1280758/239‑1 (MQ=255) t‑gt‑gtgGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTACCAACTCTTCTGATTCAGATCCCCTTATTATCATCCCTCCAAAGTGGAAACTTGCCacatgacccttatacacc > 1:591606/1‑222 (MQ=255) gt‑gtgGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTTTTTGGCTATTCAGGa > 2:854768/1‑239 (MQ=255) gt‑gggGGGTTTTTTC‑TT‑TA‑TCATACGCATCGACCTAAAGCTT‑AAAAAAAATGT‑TGCTTAAAGTCTAATAAAAAAAG‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa < 2:436389/239‑1 (MQ=255) gggTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATgggg > 2:335390/1‑239 (MQ=255) ggTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCACTTGTTTGGCTATTAAGGATGGGGc > 1:13173/1‑239 (MQ=255) ttttC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGAGGGGGCAGa > 2:994348/1‑238 (MQ=255) tttC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGGTCGAGGCCTCGAGGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTTCAAAGAGGCACATTTCAATTGTTTGGCTATTCAGAATGGGGCAGAca > 1:1296015/1‑238 (MQ=255) tttC‑TG‑TA‑TCTTACGCATCGCACTCAAACCT‑GACAGAAAATA‑TTCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCACCAGGAATAGCAGACGACAACCAGGCTTGTTGTCTGGTACGGGGTTCGCAACATCGATGGCGGTCCACCTTTTCAAAACTCTTCTGAATACGATCCCCTTCTTATCATCCCCGCACCGTGTAACCTTGCCATTGTTTgctgtttccggagagggacgacc > 1:979040/1‑217 (MQ=255) tttC‑TG‑TA‑ACTTACGCATCGCTCTCAGGCCT‑GACAGAAAATA‑TGCTGTAAAGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGAAGACGACAAACAGGATTGTTGTGTGGTACAGGGTTCCAGTGCTCGTAGACGCACCAACCATTGAAAACACTCCGCAGTCAGATCCCCTCATTTTCATCCCTGCAACCAGGAACCTTGCAATGGATTGGCTATTACGGATGGGGCAGAc > 1:657936/1‑238 (MQ=255) a‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTCCGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa > 2:752703/1‑165 (MQ=255) tCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑Tg < 2:740202/36‑1 (MQ=255) tACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTCCAAAGTGGACCATTGCCCTTGTTTTGCCCTTCAGGTATGGGCAAACCAAGAaaaaaa > 1:874407/1‑238 (MQ=255) acccgacttcaaaccataCAAAAAATA‑TTGTGAAAGGCTAAAAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTAGGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCca < 2:791503/222‑1 (MQ=255) aTCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa > 2:201823/1‑212 (MQ=255) aTCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATAAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCCATTCAGGATGGGGCAGACCAGTGAAAAAAGACcac > 2:525790/1‑239 (MQ=255) cGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCt > 1:740202/1‑36 (MQ=255) | CTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCG‑ACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTC‑GCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGT‑GAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCA‑TCATGTTT‑GT‑GTGGGGTCTTTTC‑TG‑TA‑TCTTACGCATCGCACTCAAGCCT‑GACAGAAAATA‑TGCTGTAAGGCTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCAC > NC_000913/345063‑345523 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |