| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,762,268 | T→G | 22.8% | G29G (GGT→GGG) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,762,268 | 0 | T | G | 22.8% | 71.1 / 2.2 | 60 | G29G (GGT→GGG) | rhsA | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| Reads supporting (aligned to +/- strand): ref base T (18/25); new base G (12/4); total (30/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.91e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTG > NC_000913/3762036‑3762499 | tCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGCCAGGGCGACATGACGCAGTATTGCGGACACATTGTTCAGGGTTAAGCCGGGGGGGGC‑CTTG‑Gttcgcc > 2:1272961/1‑233 (MQ=18) tttaagagacaacaTTTTTTTCATGGTGATATAAATATTTTCCTAATTATTTCACTTTGATTGATAACACACTTCAGGGTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCa < 1:1032526/228‑1 (MQ=17) atCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGACTTGTTCCGGGTTCAGCCGGGGTGCGC‑CTTT‑TGGCCCCCACCGGC‑GTg > 2:461655/1‑239 (MQ=255) tGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTTACCCGGGGTGCGC‑ATTG‑GGGCCCCCACCGGCGGGGGCCTG‑tacctttt > 2:1032526/1‑231 (MQ=17) tGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGGAGCATTGTTCAGGGGTCAGCCGGGGGGCGC‑ATTG‑GTGCCCCCACCGGC‑GGTGCCCG‑TTCg‑ggggg > 2:738394/1‑234 (MQ=255) tagtttCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGc < 2:1040173/196‑1 (MQ=255) atTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCAATGTTCCGGGGTCAGCCCGGGGCCGCGCTTG‑GGCTCCCCCCCGGC‑GT‑GCCTG‑TTccggggggcaccgaggagggg > 1:896026/1‑219 (MQ=17) ttCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGAACTGAGGCAGTATGACGGCAGGACATTTCAGGGGTCAGCGCGGGCGCGC‑ATTG‑GGGTCCCCACCGGC‑GTCGCCTT‑TTCGCGT‑AG‑GCCCcggggaggggtgg > 1:872472/1‑229 (MQ=17) cTAATTTTTTCCCGTTGTTGGATATCCCCCTTTAGGGTTTCTTATAAATTTGTAGGGTTTCGCCGGTCAGACGAAAAATAACCCGATAAAACAAGGAAGAGAAACGAGCGGAAAACCGGCAGCGGGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCCCCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCg < 1:461655/239‑1 (MQ=14) gtgtgtacaagagacaggttCAGGCTTTCTTAAAAATTTTTAGGGGTACGCCGGGGAGCAGACAAATAACCCGATAAAACAAGGAAGAGAAAGGGGCGGAAAACCGGCAGCTCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCa < 1:277470/221‑1 (MQ=14) aTGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGGGGC‑ATTT‑TGGCCCCCACCGGC‑GTGGCCCT‑TTCG‑GG‑GT‑GCCCCGGCGGGGTGAAGG‑CCGGCCCTCCGGTCAAAcc > 2:996050/1‑238 (MQ=14) aTGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGGCGC‑ATTG‑GTGCCCCCACCCGG‑CTGGCCCG‑TTCG‑GG‑TT‑GCCCCGGCGGGGGGGCCG‑CCGGCCCTCCCGGCAATcc > 2:677428/1‑238 (MQ=14) aTGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCCGGGGGCGC‑ATTG‑GGGCCCCCACCGGC‑GTGGCCTG‑TTTG‑GG‑GG‑GTCCCGGCGGGGTGACGT‑CCGGCCACCCCGTCAATcc > 2:238004/1‑238 (MQ=14) tgaagtcatgtttgaGGTTTTATTAAAAATCTGGGGGGTGTCGCCAGTACGTCGACCAATAGCCAGATAAAACAAGGATGAGAAATGTGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTAGGGCGGTAGCATTGTGCAGGGTTCAGCCTGGGTGTGC‑ATTG‑GTACCCCCCCCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCt < 1:174620/225‑1 (MQ=14) ttcttccTTCAGGTTTTTTTATAAATCTGTAGGGTTTCGCCTGGCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GTCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCt < 1:238004/232‑1 (MQ=255) atgtgtataagaggcagcTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCt < 2:143372/221‑1 (MQ=255) ctcACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGAGGCAGTATGGCGGTAGCATTGTTCCGGGTTCAGCCGGGGGGGGC‑ATTGAGGGCCCCCCCCGG‑‑GTGGGCTG‑TTGG‑GT‑GG‑GGCCCCGGGGGGGGACgg‑ccggccccccgcggcatcccccccccgg > 1:975244/1‑217 (MQ=14) ctcACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTTG‑GG‑TT‑GCCCCGGCGGGGGGACGG‑CCGGCCCACCCGGCAAACCCCCGccccg > 2:991085/1‑235 (MQ=14) ctcACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCACTGTTAAGGGGTCAGCCGGGGGGAGA‑CTTG‑TGGCCCCCCCCCGC‑GCGGCCTGTTTGG‑GG‑GT‑GCCCC‑GCGGAGGGGCGG‑CCCGcccccccggccaaccccccccccg > 1:1202354/1‑217 (MQ=14) ctcACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAACAAGGTTCCGGGGTCAAGCGGGGGGGGC‑CCTG‑GTGGCCCCACCCGC‑GGGGGCTG‑TTCG‑GT‑GG‑GCCCCGACGGTGGGGCGC‑CCGGCCCCCCGGGGCATCCCCCGCCC‑gg > 1:363002/1‑239 (MQ=14) ctcACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGGAGCATTGTTCAGGGGTCAGCCGGGGTGCGC‑CTTT‑GGGCCCCCCCCGGC‑GTGGCCTG‑TTCT‑GG‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCACCCGGGCAATCCCCTGCTC‑gg > 2:1272505/1‑239 (MQ=14) cTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑a < 2:975244/239‑1 (MQ=255) cTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCCTTGTTCAGGGTTCAGCCGGGTTGCGC‑CTTT‑GTGCCCCCACCGGC‑GTGGCCTG‑TTTG‑GT‑GT‑GCCCCCGCGGGAGGACGG‑CCGGCCCTCCGGGCCATCCCCCGCCC‑GGGG‑C‑CAAGGACCTTc > 2:8589/1‑238 (MQ=14) cTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGGCGC‑CTTG‑GTGCCCCCACCGGC‑GTGGCCCG‑TTCG‑GT‑GT‑GCCCCGGCGGGGTGAAGT‑CCGGCCCTCCGGGCAATCCCCCGCTC‑CGTGCC‑AAAGGGCCtc > 2:773840/1‑237 (MQ=14) cTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCAATGTTCAGGGGTCAGCCGGGGGGGGC‑ATTG‑GTGCCCCCCCCCGC‑GTGGCCGG‑TTCG‑GT‑GT‑GCCCCGGCGGAGGGACGT‑CCGGCCATCCGGGCAAACCCCCGCt > 2:277470/1‑221 (MQ=14) ctttAGGTTTTCGCCGGTCAGCAGACAAAGAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGGCGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAAc < 1:738394/236‑1 (MQ=255) tGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGGAGCACTGTTCAAGGTTCCGCCGGGGGTCGC‑ATTG‑TGGGCCCCCCCGCC‑GGGGGCCG‑GTCG‑GG‑GG‑GGCCCCGCGGGGGGACAG‑CCGGCCCCCCCGGCAATCCCCCGCCCGGGTG‑C‑CAA‑GTGCCTCCCGGGGaaaac > 1:119295/1‑237 (MQ=2) gTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAACGCGTCAGGGCGACATGACGCAGTATGGCGGGAACAATGTTTAGGGGTCAGCCGGGGTGCGC‑ATTT‑GGGCCCCCCCCGGC‑GGGGCCTGTTTCG‑CG‑GG‑GCCCCGCGGGCTTGACGC‑CCTGCCCACCGG‑CAACCCCCCCCCC‑GGGG‑CGAAAGGCCCCTCCCGGGGAAAc > 1:513032/1‑238 (MQ=9) tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCCGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GG‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGGCCTTTCCGGCGAAACCGACCTCGc > 2:36113/1‑238 (MQ=255) tCGCCTGGCAGCAAGCAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGcc < 2:872472/239‑1 (MQ=255) ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTTAAATTTTTTAGGGGTTAGCCGAGAGGCGC‑AACG‑TGGCCCCCACCACG‑GCGGCCCG‑TTCC‑TTGGT‑GCCCGCGCGG‑GGGGGGC‑CCGGCCACGCAGGCACTCCCCTCCCC‑GGTG‑C‑GAAGGGCGTTccctgcggaccccacaacccccc > 1:308182/1‑218 (MQ=2) ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGGATTGTTCAAGGGTCACCCCGGGGGCGC‑CTTG‑GTGCCCCCAACGGC‑GGGGCCTG‑ATAT‑GG‑GG‑GCCCCCGCGGGGGGTAGG‑CCGGCCATCCCGGACATCCCCGCCTC‑GGGG‑C‑CCAGGGGCTTTCCCGGGAAACCCACACCCCCCt > 1:854566/1‑238 (MQ=9) cagACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGGATTGTTCAGGGGTCAACCGGGGGGGGC‑AATG‑GTGGCCCCACCGGC‑GGGGCCCG‑GTGG‑GG‑GG‑TCGCCGGCGGGGGGGCGTGCCGGCCACCCGG‑CAACACCCCGCCC‑CGGG‑C‑CAAGGGCCCTCCCCCGGAAACCCCCATCcccccccccccgcg > 1:1249435/1‑229 (MQ=2) aaTAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAACATTGGTCCGGGTTCAGCCGGGGGGCGC‑ATTG‑GTGCGCCCACCCGC‑GTGGCCCG‑TTTG‑GT‑GTGGCCCCGGCGG‑GGGACGG‑CCGGCCCCCCGGCCACTCCCCTGGTC‑GCGG‑C‑CAACGGCCTTCCCCGGGAAACCCACACCCCCCCcccccgccccgcccc > 1:144063/1‑233 (MQ=9) tAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGt < 2:101870/239‑1 (MQ=255) aTAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGGGGGACGT‑CCGGCCATCCGGTCAATCCCCTGCCC‑GGGG‑C‑CAAGGTCCTTCCCGGTGAAACCGACATCGCCCTCCCCGGCCCCCTCCCGTTCATcc > 2:642777/1‑238 (MQ=14) aCAAGGATGAGAAATGAGCGGAAATCCGGCAGCGCGTCAGGGCCACATGGCGCCGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTccc < 2:939222/239‑1 (MQ=255) aCAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCGGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTccc < 2:854566/239‑1 (MQ=255) tGAGAAATGGGCGGAAACCCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTa < 2:1202354/239‑1 (MQ=255) tggaAATGGGGCGAAAACCGGCGGCGCGTCAGGGGGGCGTTGCGGGGTGTGGCGGTAGCCTTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTa < 1:642777/236‑1 (MQ=11) gggaAATGGGCGGAAAACCGGCGGCGGGTCGGGGGGACATGCCGCAGTAGGGCGGTGGCATTGTTCAGGGTTCAGCCGGGGGGCGC‑ATTG‑GGGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTa < 1:1272505/236‑1 (MQ=11) gaggAATGAGCGGAAAACCGGCAGCGCGTAAGGGCGACAGGACGGAGTTTGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTa < 2:571900/238‑1 (MQ=255) aaTGGGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GCGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTAcagc < 2:119295/238‑1 (MQ=25) cgcgTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGcc < 2:582885/238‑1 (MQ=33) gTCAGGGCGACATTCCTCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCcgcg < 2:477454/239‑1 (MQ=18) aaaTGACGCAGTATGGCGGTAGCATTGTTCGGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTggg < 2:129534/236‑1 (MQ=17) cATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgggg < 2:248647/238‑1 (MQ=32) aCGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATGG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGGTACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGcc < 2:886311/238‑1 (MQ=17) gTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGcc < 2:1277338/239‑1 (MQ=32) tGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GGGCCCCCCCCGGC‑GGTGCCTG‑GTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCCGCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGc < 2:144063/239‑1 (MQ=255) ggTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCCACTACAGCAGGTACCGGCCAAAAACGCCCGCGCCGGTGGGGAGGCTCGGCCCCCGCCGGAAAAAGCCAGCGGa > 1:62470/1‑239 (MQ=11) tCAGCCGGGGTGCGC‑ATTG‑GGGCCCCCCCCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:497566/239‑1 (MQ=17) cAGGCGGGGTGCGC‑ATTG‑GGGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:1031017/238‑1 (MQ=17) cAGCCGGGGTGCGC‑ATTG‑GTGCCCCCCCCGGG‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:707827/238‑1 (MQ=17) cggcGGGGAGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGCCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑CGTG‑C‑AAAGGGCCTTCCCGGTGAAACCGACATCCCCCGGCCCGGCCCGCTGCCGTTCATCCTCCCCCGCACCTACACCAGTTAACGGGCAAAACCACCCGCGCCGGCGGGGGGCCTGCGCCCCGGCCGGcaaaaacacgcggccagcc > 1:18147/4‑224 (MQ=11) aGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACCAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCGGGGAAATGCCTGCGGACATcc > 2:551815/1‑239 (MQ=12) gggTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCCCCCCCACCCACCGCCGTTACCGGCCAAAAACGCCCGCGCCGGCTGGGGGCCCCGCCCCCGCCCGGCAAAtacaccggcacacacgccg > 1:1211424/1‑220 (MQ=11) gggTGCGC‑ATTG‑GTGCCCCCACAGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCCTCCGGCCAATTCCCTGCTC‑GGGG‑C‑AAAGGTCCTTACCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCCGTTACCGGCAAAAAACGCCCGGCCCCGCGGGGGGCTCCGGCCCCCGTCGGaaaaaagcaccggagaacccctgc > 1:101793/1‑219 (MQ=11) gTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGCCAAAAACGCCCGCCCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTCCGGATATCCGCTTAc > 2:580260/1‑238 (MQ=17) gc‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTg < 2:363002/239‑1 (MQ=11) c‑ATTG‑GTGCCCCCACCGGC‑GGGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTg < 2:36264/238‑1 (MQ=11) | TCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTGCGC‑ATTG‑GTGCCCCCACCGGC‑GTGGCCTG‑TTCG‑GT‑GT‑GCCCCGGCGGAGTGACGT‑CCGGCCATCCGGTCAATCCCCTGCTC‑GGTG‑C‑AAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTG > NC_000913/3762036‑3762499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |