Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,429,998 | C→T | 17.3% | S45F (TCT→TTT) | cycA → | D‑alanine/D‑serine/glycine transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,429,998 | 0 | C | T | 17.3% | 141.3 / 5.9 | 72 | S45F (TCT→TTT) | cycA | D‑alanine/D‑serine/glycine transporter |
Reads supporting (aligned to +/- strand): ref base C (19/39); new base T (9/4); total (29/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.58e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCT > NC_000913/4429771‑4430236 | attccGATTAGTCCCGATACAAATTCGTCGTATCATAGACTGAACAAAGGCCGTAGATCCTGAACAACACATACAGGTAAAGGAAGAAAAAACCATGGTAGATCCGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGa < 1:270935/235‑1 (MQ=255) aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑CCATTGGG‑AAC‑GGGGTGGTTTATGGGG‑CTGGCaaaaagtatta > 2:359873/1‑230 (MQ=255) tCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGCCCATT‑GG‑‑AC‑GGGGGTGTTTTTGTGGGTTTGCAAAAAGAATAGcccttcc > 1:1029941/1‑234 (MQ=255) cccGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCg < 1:259410/239‑1 (MQ=255) aTTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑GG‑TAC‑GGGGGTGTTTTTTGGGGCTTGCAAAACAATTAGCCTTTCCGGGCCGGCGac > 2:1100964/1‑238 (MQ=255) aTTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTAGCTACGGCGCAATCTCACAAACCGACATATTCAGCTAATTGCCATTGGCGGAG‑CGCTT‑TG‑TAT‑GGGGGTGGTTTTTGGGTCGGGGAAAACAAGTAGACCTGCCCGGGCgggggc > 1:883964/1‑234 (MQ=255) tcgtATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑GG‑TAC‑GGGGTTGTTTATTGGGTCTTGCCAAACGATTTGCCCTTCCGGGGCGTCGA‑TG‑Attt > 2:1099334/1‑239 (MQ=255) aggttacATAGACTGAAAAAAGGCGGGAGAGCCTGAACAACAAAGACAGGTAAAGGAAAAAAAAAACTGGGTAGTACCGGTAAAAGGCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGTTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑Att < 1:9754/232‑1 (MQ=255) aacaTCATAGAATGATAAAAGGCCGTAGAGCCTGAAGAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGAGCAGGTAAAAGTCGTTGCCGATGACCAGGCTCCGGCTTAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑Attt < 1:23695/235‑1 (MQ=255) tCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑GG‑TAA‑GGGGGTGGTTTTGGGGGTTGGGAAAACAATTAACCTTTCCGGGCCGTCGagaatattttgt > 2:230845/1‑228 (MQ=255) aGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTtata < 2:1085544/239‑1 (MQ=255) actgactAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATg < 2:249283/239‑1 (MQ=255) tgactAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑TG‑TAC‑TGGGGTGTTTATTGGGGCTGGGAAAACGATTTACCCTTCCCGGCCGCCGC‑TC‑ATTTTTGTTTttatctt > 2:9754/1‑236 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑GCATT‑GG‑TAA‑GGGGTTGGTTATGGGGGCTGGCAAAACGATTATCCTTGCCGGGCCGGCGA‑TT‑CTTTTCGGTTatatatgca > 2:145966/1‑234 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑TG‑TAC‑GGGGTTGTTTTTGGGGTTCTGCAAAACAATTAGCCTTACCGGGCCGTCGG‑TC‑GCTTTCTTTTttatattca > 2:292096/1‑234 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑CCCTT‑GG‑GAA‑GGGGGTGTTTTTGGGGTTTGGCAAAAACATTAGGCTTTCCGGGCCGGGCG‑TC‑ATTTTCGGTTATTTgcttt > 2:23695/1‑235 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAAACGACATATTCAGCTTATTGCCATTGGCGGGT‑GCATT‑TG‑TACGGGGGTGGTTTTTGGGGTTGTGAAAAACAATGTGCTTTGCCGGGCC‑TGGG‑TC‑ATTTTTGttttctttaaca > 1:1044462/1‑230 (MQ=255) ctAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑t < 2:883964/239‑1 (MQ=255) acaaaagccgtgaggCCTAAACAACAACGCCAGGTACAGGAAAAAAAAAACATGGTGGATCCGGTACAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAAGCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTTGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑t < 1:1130092/225‑1 (MQ=255) aaaaaggcccgaagtctggAACAACCAACACAGGTAAAGGAAGAAAAAAACATGGGAGGTCAGGTAAAAGTCGTGGCCGATGATCGGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑t < 1:1099334/221‑1 (MQ=255) aaaaaGGCCGTAGGTCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACAGGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATACTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑t < 2:737964/237‑1 (MQ=255) gTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑TG‑TAC‑GGGGGTGCTTATGGGGTCTGGCAAAACGATTTACGTTGCCGGGCCGCCGA‑TA‑CTTTTCGTTTTAATAGT‑CA‑TTTGttttta > 2:751691/1‑237 (MQ=255) gTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑CCCTT‑GG‑GAC‑GGGGGTGTTTTTGGTGGTTGGCCAAACAACTAGACGTGTCGGGGCCCGGG‑TC‑ATTTTCGttttatagaagcttggttgttt > 1:968533/1‑220 (MQ=255) gTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGCAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGTTACGGCGCAATCTCACCAACCGAGATATTCCGATTATGGCCATTGGCGGTG‑CCACT‑GGTTTC‑GGGGGTGTTT‑TGAGGGCTGGCACAAAGATTTGCCATTCCGGGGCGTGGAGCC‑GTTTTTGTTT‑TTTTAT‑CA‑TTTGttttta > 1:910751/1‑237 (MQ=255) cacaGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑GCCTT‑TG‑ATC‑GGGGTTGGTTATTGGGGTTGGCCAAACGGTTTACCCTGGCCGGTCGGGGG‑TC‑CTTTTTGTTTTTATAAT‑TATTTGGTTTTTTGTTTTTTTTAGtat > 1:119709/1‑237 (MQ=255) acgaaagggtcaatgaaaaaAAAAACCGGGGAGAAAAGGTAAAAGGCTTTGGCGAGAATCAGGCTCCGGCTGAACAGTCGCTGCGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATg < 1:608782/225‑1 (MQ=255) acagGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAA‑CGGGGTGTTTTTGGGGGCTGGCCAAAAGATTAGCCTTTCCGGGGCGGCGG‑TC‑CTTTTCGTTTTTATGAT‑TA‑TTGGGTTTATGCTCTTTTTTGTGATGCgg > 2:55174/1‑238 (MQ=255) agGTACAGGAAGAAAAAAACATGGGAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCa < 2:634803/239‑1 (MQ=255) tACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGTTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGc < 2:398454/235‑1 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGGTGTTTTTGGGGTCTGGCCAAACGATTAGCCTTTCCGGGCCGTCGG‑TC‑ATTTTTGTTTTTTTGAT‑CT‑TTGGGTTTTTTCTCTTTTTTGTGCTTCGGGGAATTGGGGGAttt > 2:1294739/1‑238 (MQ=255) aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑CCCTT‑TG‑TAC‑GGGGGTGTTTTTGGGGACTGGCAAAAAGTCTAGCCCTGCCGGGCGCTGGC‑TCTATTTTC‑TTTTTATTAT‑GA‑GTGGGTTTATTCTCTTTTTTGTTGTGCGGGCACAggggggtaggg > 1:385104/1‑233 (MQ=255) gggaGATCAGGTAAAAGGCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGa < 2:644528/236‑1 (MQ=255) tCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCCCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg < 2:1102601/238‑1 (MQ=255) cAGGTAAAGGTCGTTTCCTATTATCGGGGTCGCGTTGAAACGCTGCTACGGCGCATACTCACAACCCTACCTATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg < 1:751691/237‑1 (MQ=255) aGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAA‑GGGGGTGTTTTTGGGGGCTGGCAAAAAGAGTAGCCCTGCCCGGCCGGCGG‑CC‑ATTTTTGGTTTTATGAT‑CA‑TTGGTTTTTTGTCCTTTTTTTTGTTGCGGGCAAAGGGGGGATTGTTGATTTTGaaatttgaa > 1:644528/1‑232 (MQ=255) aaaggctgtGCCGATGAACAGGCCCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACaa < 2:1326915/231‑1 (MQ=255) aaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACaa < 2:1029941/239‑1 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑TG‑TAC‑GGGGCGGTTTTTTGGGTTTTGCCAAACCGCTTGCCTTGCCCGGCCGCTGA‑CG‑GTTTTTGTTTGTATCAT‑CA‑CTGGTTTTATGCCCCTTTTTGTGATCCGGGATATGCGGGAATTGTGGCTTTTTACTCTGG‑CATACAAACCtttt > 1:194983/1‑239 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑GG‑GTA‑GGGGCGGTTTTTGGGGGGTGTCGAAACATATAGCCTTGTCGGGGCGGCGA‑TC‑TATTTTGTTTTCATGTT‑CA‑TTTGTTTTTTGCTTTTTTTTTTGTTTCGGGCCATTGGGGGATTTGTGCGTTTGGATCTgtgaaagaaaacattt > 1:1326915/1‑224 (MQ=255) ggCTCCGGCTGAACAGTCGGTACGGGACAATCTCACAAACCGACATATTCAGTTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑tt < 2:176564/239‑1 (MQ=255) ccGGTTGAAAAGTCGTTACGGGCCAATCTCACAAACCGGTATATTCAGGTTATTGCCATTGGGGGGG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGa < 1:55174/239‑1 (MQ=255) ctgtgtaaCGGTCCCTTCGGCGCAATCTCACAAACCGACATGTTCAGCTTATGTCCATTGGCGGTG‑CCATT‑GG‑TGC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGAt < 2:792496/233‑1 (MQ=255) cGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTT‑TG‑GAC‑GGGGGTGTTTTTTGGGGCTTGCAAAACGAATATCCTTTTCCGGGGGTCGG‑TC‑ATTTTTGTTTTTATTGT‑GA‑TTTGTTTTTTGCTCTTTTTTGTGATTCTGGCGATGGGGGGATTGTTTTTTTTTTATTTGG‑GATAAAAAACTTTTTGttgcttgtgttctgat > 1:610013/1‑224 (MQ=255) gAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTTTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACt < 2:968533/239‑1 (MQ=255) gacagtgtgttcGGCGCAATCCCCCAAACCGGCATATTTAGCTTATTTGCATTGGGGGGT‑CCATT‑GG‑TGC‑GGGGTTGTTTTGGGGGTCTGGGAAAACGATTAGCCTTGGCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTc < 1:743173/228‑1 (MQ=255) aCAGGCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTc < 2:1044462/238‑1 (MQ=255) cGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGcc < 2:803210/238‑1 (MQ=255) tctcACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑TG‑TAC‑GGGGGTGTTTATGGGGGCTTGCAAAAAGATTAGCCTTTCCGGGCCGTCGG‑TT‑ATTTTTGTTTATTATAT‑TA‑TTGGTTTTTTTGTCTTTTTTGTGGTTTGGGGCATTGGGGAATTGTTGCTTTTTGATCTGGTGATA‑AAAACTTTTTTTGGTTTCGC‑TTCCGTTTTATTTCGGGCGTggggggggaatt > 1:465131/1‑230 (MQ=255) tctcACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑ACATT‑GG‑TAC‑GGGGGTGTTTTTGGGGGTTGGCAAAAAGGTTAAGCTTTGCGGGCCGGCGT‑TC‑ATTTTCGTTTTTATGATCCA‑TTGGTTTT‑TTCTCTTTTTCGTGATGTGGGCCATGGGGGGATTGCTGCGTTTGTATTTGG‑TATACAAAACTTTTTTTGACTTTGCGTTCCG‑TTTACTTGAGCCGGGGGCAGGAGAtt > 1:173164/1‑239 (MQ=255) aaCCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCgg < 2:1222621/239‑1 (MQ=255) aCCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGc < 2:202196/239‑1 (MQ=255) tattttccgtttATTGCCTTTGGGGGGG‑CCATT‑GG‑TAC‑GGGGTTGTTTTTGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTAGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCAGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGa < 1:600457/228‑1 (MQ=255) tatTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGAt < 2:997468/132‑1 (MQ=255) tcttgtttttttccATTGGCGGTG‑CCATT‑GG‑TTC‑GGGGTTGTTTATGGGGTTTGGCAAAACGATTGGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATAGGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTAc < 1:1100964/227‑1 (MQ=255) ttGCCTTTTGCGGTG‑TCATT‑GG‑TGG‑GGGGTTTTTTATGGGGTCTGGAAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgc < 1:359873/239‑1 (MQ=255) ttGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGTTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgc < 2:610013/239‑1 (MQ=255) ttctgttGGTGGGG‑CCATT‑GT‑GAG‑GGGGTTGTTTATGGGGTTTGGCAAAACTATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑TA‑TTGGTTTTATGCTCTGTTTCGTGATGGGGGGAATGGGGGAATTGCTGCTTTCGAATTTGG‑AATAGAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgct < 1:292096/234‑1 (MQ=255) tGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgct < 2:385104/239‑1 (MQ=255) ccATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGc < 2:728866/218‑1 (MQ=255) ttGGCGGTC‑CCATT‑GG‑TTC‑GGGGTTGTTTATGGGGACTGGCAAAACGATTAGCCTTGCCGGGCCGTGGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCGTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCTGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGtt < 2:431681/239‑1 (MQ=255) cGGTG‑CTATT‑GG‑GAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATAGGAT‑CA‑TTGGTTTTATGCCCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTa < 2:910751/238‑1 (MQ=255) cGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTa < 2:119709/238‑1 (MQ=255) ggTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTaa < 2:1154227/238‑1 (MQ=255) ctgtcccATG‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATTAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTa < 2:5238/233‑1 (MQ=255) c‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGTTATTTCCCCGGCTGGACTTACTTGTTTTGCTGGGTTGTAAACGGTATGGgagaa > 1:621713/1‑238 (MQ=255) ggggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCGGACg > 2:605724/1‑239 (MQ=255) ggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACgtg > 2:1186217/1‑239 (MQ=255) ggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCCC‑TTCCGATTTATTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTCATGGGTCTGCTGGGTTGTCACCGGTATGGCAGAccgg > 2:1274760/1‑236 (MQ=255) gttTATGGGGTTTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TCGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGtggtgg < 2:490106/239‑1 (MQ=255) tttATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGGGGc > 2:1154529/1‑239 (MQ=255) gggTTTGGCAAAACGATTAGGCTTGCGGGGTCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGGGATGCGGGCAATGGGGGAATTGGTGCTTTCGAATCTGG‑AATACAAAGCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCAc < 1:1294739/239‑1 (MQ=255) ggTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTGTTCGGGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCAc < 2:362593/238‑1 (MQ=255) cTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTaa > 2:740318/1‑207 (MQ=255) cTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTAACCGGCTGGACTTCCTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCt > 2:372008/1‑239 (MQ=255) | ATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATT‑GG‑TAC‑GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGA‑TC‑ATTTTCGTTTATATGAT‑CA‑TTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGG‑AATACAAATCTTTTAGTGACTTCGC‑TTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCT > NC_000913/4429771‑4430236 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |