| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 825,248 | G→C | 20.2% | G287G (GGC→GGG) | ybhR ← | putative ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 825,248 | 0 | G | C | 20.2% | 111.6 / 3.4 | 62 | G287G (GGC→GGG) | ybhR | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (21/25); new base C (11/2); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482 | aCGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGGGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCACCTTCAAACCAAA‑AACGccca > 2:442325/1‑237 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACGATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGAAAAA‑CAACGCGATaaaag > 2:1170016/1‑236 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAAAAA‑AACGCCGATAAACg > 2:932817/1‑238 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGcccgaaaaag > 2:616357/1‑230 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGGTAATCCAAGTTCGG‑TTTTGCAGCCCTACCGGCCGGGTTTCCACCGGAGAA‑ACGTAACCGGAAAGGGGAAAGGCGGGCATCCTAAAGAAAAA‑AACGCCCAGaaaaa > 1:919682/1‑236 (MQ=255) aCATCGGGTACCCCTCTGCCCCTGTCGTGGCCGTTACCACCAGTAGCGGCCACAACCTATCCCAAACAATACCCAGACTCGCATCCTTCAAATAAAT‑CTGTTTG‑GTAATGTCCGTAAAGG‑GGCAAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGcc < 2:586059/239‑1 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCGTCATAAAGAAAAA‑AAACCCGATAAAAGCct > 2:260705/1‑236 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGACCAA‑AACACCCGTAAACGCccgct > 2:170512/1‑239 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCCATCAACGCct > 2:148078/1‑236 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGAATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAGCAA‑AACCCCGATAAAAGccc > 2:937052/1‑235 (MQ=255) gcgTACGCCGCTGACCCTTCCTTGGCCTTAACCCCAAGTAGCGGCCAAAAACTATCCCACAAAATATCCAGCCTCGCTTCCTTCAAATAAAC‑CTGTTGG‑GTAATGTCCGTAAAGT‑GGCAAATAGGGTTAACCCACTTAAGG‑TTTGGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCctgctg < 2:620549/239‑1 (MQ=255) cgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGGTAAACGCCTGCcgt > 2:1166454/1‑239 (MQ=255) cgTACGCCGCTGACCCTGTCGTGGCAGTTATCACCAGTAGCGGCCACAACCTATTCCACATACTATCCAGACTCGCATGCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGACTAGGGTTAATCCACGTCTGG‑TTTTCCAGCCATACCGGCTTGTTTTCCACAGGAGGC‑ACACAACCCGAAAGGTGAAGTGCGGGCCACCTACAGACACA‑CACAccctacaaacccccatcg > 1:988821/1‑223 (MQ=255) gTACCCCGCTGCCCCTGTGGTGGCCGTTATCACGAGTAGGGGCAAAAAATTTTTCCCCACAATACCAAGACTCCCATCCTTAAAAAAAAT‑CTGTTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAACCCACGTAAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAGGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCtgtt < 2:389140/239‑1 (MQ=255) cccTTTGGTGCCCGTTTCCCCCAGTAGCGCCCACAAACTTTCCCCAACAATACCAGGCCCCGAATCTTTAAAAAAATT‑CTGCTTG‑GTAAGGCACGAAAAGG‑GGCAAATGGGGTTAACCCAGGTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACaga < 1:1166454/239‑1 (MQ=255) ccgtgccttttacccccATTACCGGCCACAAAATGTTCCACACAATACCCAGACCGGCACACTAAAAATAAAC‑CTGCTGG‑TTAATGTCCGAAAAGG‑GGCGAATAGGGTAAATCCCCGAAGGG‑TTTTGCAGCCATCCGGGCATGTTTTCCACCGGAGAA‑ACGTAACGGAAAGGGAGAAGGGGGGGCATCAAAAAAACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGtga‑t < 1:670728/224‑1 (MQ=255) ggCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAAACAAA‑CACGCCGATAAACGCCCGCTGGTGGG‑GTGAACaagagggttgaa > 2:1247951/1‑228 (MQ=255) gCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCTTAAAGACAAA‑CACGCCGCTAAAAGCCCGCCGTTGTG‑TTTAACAGAGGGA‑TGAAAt > 2:762030/1‑239 (MQ=255) ccGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGA‑GGCGAATAGGGTTAATCCACTTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGTGGTCATCATAAAGACAAA‑CACCTCGATTACAGCCTCGCGTTGTGTTTGAAAagagagtaaaaac > 2:694743/1‑230 (MQ=255) tttATCCCCATTGCCGCCCACAATTTGTTCCACACAATACCAAGACT‑GCATCCCTAAAAAAAATCCTGC‑TG‑GGAATGTTCCTAAAATGGGGGAATAGGGTAAACCCCCGTCAGT‑TTTGGAAGCCATACCGGCATTTTTCCCACGGGAAAA‑ACTTAACGGAAAAGGAGATTGGGGGGAAACAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCaa < 1:585749/238‑1 (MQ=255) gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGAGCCTAAAAACAAA‑AACCCCGCAAAAACCCCGCTGTTGTG‑TTGAACAACATGA‑TGAAAACAAAAAAACGAAAaccacc > 1:1014227/1‑239 (MQ=255) gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGCCGATAAACGCCCGCTGTTGTG‑TTTAACAGCGGGG‑TGAAAACCACAGACCGAATCccac > 2:459423/1‑238 (MQ=255) cacaAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATCGGGTTAATCCACGTCAGG‑TTTTGCAGCCAAACCGGCATGGTTTCCACCGGAGAC‑AACTAACCGGAAAGGAGAATAGCGGGGATCGCGAAAACAAA‑CAACCCGAAAAAAACCACCTGTTGTG‑TGGCAAAGAGAGA‑TGAAAACACAAGACCGAAACCCCCCAg > 1:833023/1‑239 (MQ=255) acaATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCCTAAAGACAAA‑CACACCGATAAACGCCTGCTGTTGGT‑TTGAAAAAATGGA‑TGAAATCAAAAAACCGAATCCCCCCAGCGATAAACCATaaa > 2:114765/1‑238 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGATAAACGCCGGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAAAAGACCGAATCCCACCACCGGTAAACCATAAATCAcc > 2:749689/1‑239 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATAACGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGAATCTTAAAGACAAA‑ACAGCCCAGAAACGCCACCTTGTGGG‑TTGTACAGAGGGT‑TGAAAACAAACAACCGAACCCCACCACCCGTAAAcacaaaaaaaca > 1:984217/1‑228 (MQ=255) cAGACTCGCATCCTTCAAATAAAT‑CTGTTTG‑GTAATGTCCGTAAAGG‑GGCAAATGGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCg < 2:856289/239‑1 (MQ=255) gtccccatgcttaaataaat‑CTGTTTGTGTAGTGTCCGAAAGGT‑GGGGTAGGAGTTTAGTCCCGGTCAGT‑TTTGGCAGCCATCCCGGGA‑GTTTTCCCCCAGAAAACCCGTCACCGAAAAGGAGATTGGCGGGCATCAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTa < 1:1156007/226‑1 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGCA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAAACAAA‑CAACACGCTAAAAGACAGCTGGTGTG‑TTTAACAAAAGGA‑GTAAAACCACAGAACGACTACCACCACAGAGAAAcacaaaataacaaacagaaaaaaa > 1:1016939/1‑216 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGGACAA‑CAACCCGATAAACGCCCGCTGTTTGG‑TTGAACAGAGGGA‑ATAAATAAACAAACCCAAACCACCCCACGATAAAAAAAAAAACACCAACCTaaaaaaa > 1:1188282/1‑235 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAAACGAATCCCACCACCGATAAACCATAAATCACCATCTTaaaagag > 2:812194/1‑235 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCCGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCACCGAGAAACCAAAAATCACCCCCGTAAAgaaa > 2:367521/1‑236 (MQ=255) tcttttttgttgtggcctaaaaGT‑GGCGAATAGGTTTAACCCACGGTAGT‑TTTTCACACCATCCCGGAATGTTTTCCACCGGAGAA‑CCGTAACCGGAAAGGAAAATGGCGGGAAACAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGAt < 1:932817/220‑1 (MQ=255) cTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGGTAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAAACCCACCAGCGCTAAACCCTAAATAACCATCGTAAAGTAGAAAAGAGCCAGCGactcg > 2:520897/1‑234 (MQ=255) cTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTTAACAGAGTGA‑TGAAATCAACAGACCCAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCgg > 2:126388/1‑239 (MQ=255) tGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATTATAAAGACCAA‑CAAGCCGGTAAAACCACGCTGTTGGG‑GTTGACAAAGGGAGTGAAAT‑AACAAAACGAATTCCACCACCAGTAAACCAAAAAACACACCCGTCAACAAGAAAAACGCCGCCCAACCGGGGAAgggg > 1:754882/1‑239 (MQ=255) atggggCGAA‑AGGGTTAAACCCCATTCGGTTTTTGCAGCCATACCGGCATTTTTTCCACCGGAAAA‑ACGTAACGGGAAAGGAGAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATa < 2:984217/235‑1 (MQ=255) gcgatgaggttaaacccccgagaGG‑TTTGGCAGCAATGCGGGAATGTTTTCCACGGGAAAA‑ACGTAACGGGAAAGGAAAAGGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGcc < 2:746306/216‑1 (MQ=255) gggTTATCCCACTTCAGA‑TTTGGAGCCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATAc < 2:20950/238‑1 (MQ=255) gTTAACCCGCGTCAGG‑TTTTGCAGCCATCCCGGAATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGAATCAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCa < 2:1014227/238‑1 (MQ=255) ctccgccgaaGG‑TTTTGCAGCCATCCCGGCATGTTTCCCACGGGAAAA‑TCGTAACCGGAAAGGAGAATGGCGGTCATCAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 2:1230393/230‑1 (MQ=255) acccccGTCAGG‑TTTGCCACCCATCCCGGCTTTTTTCCCCCGGGAAAA‑CCGTAACCGGAAAGGATAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 2:1074978/234‑1 (MQ=255) aTCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCCGCTGTTGTG‑GTGAACAGAGAGA‑TGAAATCAACAGACCGAATCCCACCAACGGTCAACCATAAATACCAATCGTAAAGAAGAACACCGACAAGGATCCGGGGAAGGGGAGTTggaacaacaaaaaacaaacacc > 1:407605/1‑218 (MQ=255) ccggTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAg < 2:112457/236‑1 (MQ=255) ggttaGG‑TTTGGCGGCCATCCCGGCATGTTTTCCACCGAAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATAAAAAAGCAAAC‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTAGATA‑CGCCCAGATACCAATCGCCAGca < 2:405762/235‑1 (MQ=255) cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGGTAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAGGGGGATTTGAAA‑GCCCCCGAAACCACTccccccca > 2:898513/1‑235 (MQ=255) cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAAAAGCGCCAACGAACCGGGGAAGGGGAATTGAAACCGCCCA‑AAACCAATCGCCAGcc > 2:434764/1‑238 (MQ=255) cGTCAGG‑ATTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGACTGCTGTTGTG‑TTGAACAGAAGGA‑GGTAATCACAAGACCGAACCCCACCCGCGATTAACCCAAAATCACCACATAAAAGAAGAAAAGACACACCGATCCCGCCCAGGGGGCTTTATA‑AGCCCacaaaaaaaaacccaac > 1:20950/1‑222 (MQ=255) cACGGGAAAA‑ACGAACCCGAAAAGGAGATTGGGGGGAAAAAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACg < 1:434764/239‑1 (MQ=255) cACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGGGGCCTGGAAGGGGGCGACAATTaaa > 2:1094314/1‑237 (MQ=255) cccGAAAAGGAGAATGGCGGCAAACATAAAGACAAC‑CTCGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 2:964620/238‑1 (MQ=255) aCCGAAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 2:527361/239‑1 (MQ=255) cgaagaggggtaTGGGGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCGTCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCAGCGATAAACCATAAATTCCCATCGTAAAGTAGAACAGCGCCAGCTATCCGGGGAAGGGGATTTGATT‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCg < 1:204276/228‑1 (MQ=255) aagggAGAGTGGCGGTAATAATAAGGCACAA‑CACCCCGTAAAACGACCGCTGTGGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGGGATAAACCATAAATCACCAGCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGAt < 1:613985/235‑1 (MQ=255) aGGAGAATGGGGGGCAT‑AAAAAAACAAACCACCCCGATAAACGCCTGTTGCTGTG‑TTGAACAGGGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 1:749689/239‑1 (MQ=255) aGGAGAATGGCGGATATAAAAAAGAAAAA‑CACGCCGATAAACGCCTGGTGTTGTG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 2:545955/239‑1 (MQ=255) catAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGTGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGGGGCTGCAATTAACGCCGGTACGGCTTTGCCGATGAAGGTCTGCCAGGGGGGGa > 1:1030022/1‑239 (MQ=255) aaagcaaaccacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAgcg < 2:754882/230‑1 (MQ=255) aa‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CCCCAAGATCCCAACCCCCAGCACCATGGGCGCCTGGAAGGGCGCGCGATTTACACCCGGAACGGGCTTCCCGTGGAATATCGGCAAGGGGGGGAGCGGGGaaaa > 1:1033805/1‑238 (MQ=255) accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 2:1279645/237‑1 (MQ=255) accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTACCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 2:749693/237‑1 (MQ=255) a‑cacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGGGAAAcc > 2:844732/1‑239 (MQ=255) | ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |