Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,263,180 | G→T | 19.3% | D107E (GAC→GAA) | lolB ← | lipoprotein localization factor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,263,180 | 0 | G | T | 19.3% | 149.8 / 6.6 | 75 | D107E (GAC→GAA) | lolB | lipoprotein localization factor |
Reads supporting (aligned to +/- strand): ref base G (6/53); new base T (14/2); total (20/55) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCAGGTTGCGTTTTGGTGTC‑ATAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTGC > NC_000913/1262952‑1263409 | tgcgggTTGGGTTTTGGTGTCTTTAACCTAATAAAACATCCTTCCAGTTTTCGTCATTTTGGGTGTAGGGAATTTCGCTCAGGCGGTAGTGGTCGTCCAGTTTGTAGTCGGTTGAATCACCAGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGAAATTGGCATACCGGTAAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAAc < 1:572468/235‑1 (MQ=255) gggTTGCGTTTTGGGTTT‑ATAACCCCCCAAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCa < 1:1171445/238‑1 (MQ=255) gggtGCGTTTTGGTGTT‑ATAACCATCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTTATTTCGCTCAGGCGGTACTGGTCGTACAGTTTGTAGTCGGTTGCATCTCCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTACCTGCa < 2:785140/235‑1 (MQ=255) tttggtactAACCCCCATAACCACCTTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCTAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTGTATTGTC‑GCCTAACTGCA‑CG‑TTACCCGGt < 1:1011458/231‑1 (MQ=255) aTAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCAt < 2:1129800/239‑1 (MQ=255) atcccccttAAACACCTTTCCAGTTTTTGCCGTTTGGGATGTAGGTAATTCAGCTCAGGGCGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTc < 1:1068261/231‑1 (MQ=255) cctttatccacCTTTCACTTTTTGCCTTTCTGGTTGTGGGTAATTTCGCTCAGGCGGTACTGGTCGCCCAGTTTGTAGTCGGTTGCATAACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc < 1:354386/230‑1 (MQ=255) ccaTAAACATCTTTTCAGTTTTTTCCATTCTGGCTGTAGGTAAGTTCCCCCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTGGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc < 1:1019755/239‑1 (MQ=255) ccaTAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc < 2:1212863/239‑1 (MQ=255) ccaTAAAATAGCTTTCATTTTTTGCCCTTTTGGCTGTAGGTTATTTCGCCCAGGGCGTACTGGTCGTCCAGTTTGTGGTCGGTTGCATCAACCGGTAAACCTAAAATCCTCTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc < 1:638578/239‑1 (MQ=255) cactAAACTACCTTTCGGTTTTTGCCATTTTGGCTGTAGGTAATTCCGGCCAGGCGGTACTGGGCGGCCAGGTTGGAGTCGGTTGCATCACCCGGTAACCCTAAAATCCTCTGGCGCAAGCTGTTTAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTACGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc < 1:918056/236‑1 (MQ=255) caTAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATAACAC‑AGACCTTTTTTTTT‑GACCTACTGCC‑AG‑TTACCCgcctgggaattaccgccc > 1:1163719/1‑222 (MQ=255) tAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑CGACCCTTTTTTTT‑GGCTAATCTCA‑CG‑TTTCCCGGGTGGGCAttacgcccc > 2:1145919/1‑230 (MQ=255) tAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATCAAGC‑TTACCTTTCTTTTT‑TACTAACTTCC‑CA‑TTACCCGGTTAAGCAtttcacaccca > 2:8176/1‑230 (MQ=255) accaacCTTTCATTTTTTGCCATTCTGGCTGTAGGTAATTTCGCGCAGGCGGTACTGGTCGTCCAGTTTTGAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGtt < 1:594297/237‑1 (MQ=255) ccTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGGCCCTTATTTTC‑GCCTAAATGCA‑CG‑TTACCCGGGTGAGCCTTCCGCTCCAGTTCCGt > 2:780596/1‑238 (MQ=255) cTTCCAGTTTTTGCCATTCTTGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGtgc < 2:947764/239‑1 (MQ=255) cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTCACCCTAAAATCCACTGGCTCAAGCTGTTGAGCGGAATTGGGATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTTTAACGC‑TTCCCCTTCTTTTC‑GCCCAACTCCA‑CC‑CTCACCCGTTGAGCATTCGTCCCCAGCTCCGtgc > 1:792386/1‑239 (MQ=255) cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGCCCTTTTTTTTC‑GACTAACTGCA‑CC‑TTACCCGGTTTAGCATTCACGTCCCGTTCCGtgc > 2:103235/1‑239 (MQ=255) cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGtgc < 2:30587/239‑1 (MQ=255) cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAAGC‑CTACCCTTTTTTTC‑GACTAAACGCA‑CGTTTCCCCGGTTG‑GACTTCAGCTCCCGTTCCGt > 2:594297/1‑237 (MQ=255) gTTTTTTCCATTTGGGGTGTGGGTAATTTCGCCCAGGGGGTACCGGTTGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCACCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa < 1:780596/239‑1 (MQ=255) gTTTTTGTCTTTTTGTCTTTTTGTATTTTCGCTCAGGGGGTCCTGGTCGGTCCGTTTGTAGTCGGTTGCATGACCCGGTAAACCTAAAATCCTCTGGCGCAAGCTTTTGAGGGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCGCGTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa < 1:74386/239‑1 (MQ=255) gTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa < 2:472281/239‑1 (MQ=255) ttttGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGGCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa < 2:867037/237‑1 (MQ=255) tGGCTGTAGGTAATTTCGCTCAGGCGGTACGGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGag < 2:179485/239‑1 (MQ=255) gCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGTAGACGCGGGACCTTATTTTTC‑G‑CTAACTGCACCG‑TTCCCCGGTGGGGGATTCACCCCCA‑CTCCGCGCTGcccccaggggttcggtaca > 1:37278/1‑223 (MQ=255) tgtttgtttCGCTGAGGCTGTCATGGTCGTCCAGTTTGTAATTGGGTGCTTCACCCGGTAAACCTAAAATCCCCTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCCGCTCTTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTGGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGgaga < 1:971502/233‑1 (MQ=255) aGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTGTAAACC‑TGACCCTTATTTTCTGCCTAA‑TTCC‑CG‑TTTACCGCTTGAGCATTCACCCCCCGTTCCCGGCTGCCCCCTTGGGTAGAGagccgacga > 2:102670/1‑233 (MQ=255) aGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa < 2:1237236/239‑1 (MQ=255) aGGTAATTTCGCGCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa < 2:881593/239‑1 (MQ=255) tgTAATTTCGCCCAGGCGGTTCTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa < 2:105356/237‑1 (MQ=255) cTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACCC‑CGTGCCTTATTGTC‑GCACAACTTGC‑CG‑TTATCCGGGTGAGCATTCTACTCCACTTTCCTGCCGCCCCACGGGttttggagagcagaacggagggggc > 1:1254967/1‑215 (MQ=255) tcgtcCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAACC‑TGACCTTTATTTTC‑GACTAACTGCC‑CG‑TTACCCGGTTGAGGCTTCAGCTCCCGTTCCGTGCTGCCCAATGGGGTAGTGAGCAGCGGACGGGAGCGGTCCTGGCCGGGTtgct > 2:1025415/1‑238 (MQ=255) ccAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCCTTATTTTT‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCCATGGGTTAGTGAGGAGCAGCCGGGAGCGATCCTGGCCGGGTTGGTGcccg > 2:824484/1‑237 (MQ=255) tGTAGTTGGTTGCTTTCCCCGGTAAACCTAAAACTTACCGGGGCAGGTTTGGGACCGGAATTTGGATTCCGGTCAATTTGCC‑AATCACCGCTTCGGCGGCATCGTCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg < 1:102670/239‑1 (MQ=255) tGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg < 2:37278/239‑1 (MQ=255) ttGCCTCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTa < 2:829429/238‑1 (MQ=255) cATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑GTACCTCTATTGTC‑CACTTACTGCA‑CG‑TTACCCGGTTGAGGATTCCTCTCCAGTTCCGTGCTTCCCCATGGGGTATTGAGGAGCAGACGGGAGCGGGCCTGGCCGGTTTGTTGGCAGaaaaaaggggggacacca > 1:960827/1‑226 (MQ=255) cccTGTAAATCTAAAATCCCCCGGGGCGAGCTTTTGAGCGGAATTGGCATGCCGGTCAATTGGTC‑AATCATCTCTTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttg < 1:8176/239‑1 (MQ=255) ccGGTAAACCTAAAACCCCCTGGCGCACGTTGTTTGGCGGAATTGGCTTTCCGGTCAATTTGCC‑AATCATCTCTTCGGGTGCATCGGCGGTATAACGC‑TGACCTTTAGTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCACTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGTTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttgt < 1:669000/239‑1 (MQ=255) gttacccTTAAACCCACTGGCCCAAGTTTTTGAGCGGAATTGGCATTCCGGTAAATTTGCC‑AATCGTCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTgg < 1:723259/234‑1 (MQ=255) tAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATAACGC‑TGACCTTTTTTTTC‑GCCTAAATGCC‑CG‑TTCCCCGGTTGAGCATTCAGCTCCAGTTCCGGGCTTCCCCCTTGGTTAGTGTGGAGCAAACGGTAGCGACACCTGCCGGGTTTTTGCCCGCAAAAAAGGGGGGCCACTTTTTTTTGGt > 1:962184/1‑239 (MQ=255) cccTAAAACCCCCGGGCGCAAGGTTGTGAGCGGAATTGGCATTTCGGTCAATTTGCC‑AACTCTCTTTTCGGCGGCCTCGGGGGTTAAACGC‑TGCCCTTTATGTTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAg < 1:1145919/238‑1 (MQ=255) aCCTAAAATTTCCTGGGGCAAGGTGTGGGGCGGAATGGGCATGCCGGTCATTTTGCC‑AATCATCTCTTCGGCGGCAGCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAg < 1:446924/239‑1 (MQ=255) aCCTAAAACCCAGTGCCGTGAGCTGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCCTCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTGCACTTTTTGTTGGTCAg < 1:1084413/239‑1 (MQ=255) ccTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAAGC‑CCACCTTTCTTTTC‑GCCTAACTGCC‑CC‑CTTCCCCGCTTAGCATTCAACTCCACTTCCTCGCTGCCCCCTGGGGCTGTGTGCAGGCAACGCTACCGACACCCGCCGGCTTTCTGCCCGAAAACACGGGCGGGCACTTTTTCTTGGTCaca > 1:158729/1‑237 (MQ=255) cTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTTTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTTCGCTCCCGTTCCGTGCTGCCCAATGGGGTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGGTTGCTGCCCGAAAAAACGGGCGGACACTTTTTGTTGGTCAGaa > 2:237825/1‑239 (MQ=255) cTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAg < 2:371481/182‑1 (MQ=255) ttgttgggggagaTTGGCTTGCCGGTCAATTTGCC‑AGATATCTTTTGGGGTTCATCGGAGGTTGAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCGGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc < 1:590579/226‑1 (MQ=255) tGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc < 2:1290444/237‑1 (MQ=255) tGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc < 2:323365/237‑1 (MQ=255) tGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc < 2:1018062/237‑1 (MQ=255) ggTTGAGCGGAATTGGCTTTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGa < 2:892067/238‑1 (MQ=255) cGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGa < 2:768623/238‑1 (MQ=255) ggAATTGGCTTTCCGGTCAATTTTCCAAATCCTC‑CTTGGGGGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 1:1239630/239‑1 (MQ=255) ggAATTGGCATTCCGGTCAATTTGCC‑AATCATCGCTTCGGCGTCATCGGCAGTATAACGT‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:182372/239‑1 (MQ=255) taagtggatttCCGGTTAATTTGGC‑AGTCTGCCTTTCGGAGTCATCGGCGGTTTATCGC‑GTCCCTTTATTTGC‑GAGTAACTGCA‑CG‑TGACCCGGTTGAGCATTCAGCTCGAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTGTGATa < 1:292065/229‑1 (MQ=255) gAATTGGGATTCCGGGCAATTTGCC‑AATCATTCGTTCGGGGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:960827/238‑1 (MQ=255) gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTTTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:407674/238‑1 (MQ=255) gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:341844/238‑1 (MQ=255) gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:608964/238‑1 (MQ=255) gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:158729/238‑1 (MQ=255) gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa < 2:1163719/238‑1 (MQ=255) tGGCATTCCGGTCAATTTGCC‑AATCATCTCTGCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGAt < 2:1222481/239‑1 (MQ=255) tCAATTGGCC‑AATCATCTCTTCGGCGTCAGCGGTGGTATACCGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TGCCCCGGTTGAGCAGTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTgcg < 2:967400/238‑1 (MQ=255) aTTTTCC‑AATCATCTCTTCGGGGTCTGCGGCGGTTTAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCGCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACg < 1:679866/239‑1 (MQ=255) atcatcTCCTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTtgctg < 2:971150/239‑1 (MQ=255) ctctTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCg < 2:227982/153‑1 (MQ=255) cGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCt < 2:862586/239‑1 (MQ=255) cGC‑TGACCTTTATGGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCt < 2:1108472/239‑1 (MQ=255) aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCCATGGGTTAGTGAGCAGCAGACGGTACCGATCCTGGCCGGTTTGCTGCCAGAAAAACCGGGCGTACACTTTTTGTTGTTCAGAAATATAAGCGAACACCCCGCCGGCCTGATATTGATTAAGATTGCGAAAGTCTTGCTGATGACGACTCCATTTGGGGCAATCAGGGCttttt > 1:800059/1‑237 (MQ=255) aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTTGTCAGAAATATAAGCGAACGAGCCGCGAGTCTGATACTGATTAAGATTGCACCCGCCTTGCTGAGTCTGGCGCCATTTTGGCGAAAACAGGCTTTTGc > 1:511659/1‑239 (MQ=255) aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGTTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGa > 2:713695/1‑187 (MQ=255) aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTg > 1:792075/1‑238 (MQ=255) | CGCAGGTTGCGTTTTGGTGTC‑ATAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTGC > NC_000913/1262952‑1263409 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |