| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,383,718 | C→A | 19.6% | E82* (GAA→TAA) | ycjW ← | LacI family putative transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,383,718 | 0 | C | A | 19.6% | 133.1 / 5.3 | 73 | E82* (GAA→TAA) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (49/7); new base A (2/13); total (52/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.10e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 | ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGTCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCTGGATTGTGCGCCGTTTGTAATATCACGTCACAACTTTCTTCTTCCGCTTTGGCGGTGTTTGCATCCACAACTTccatgaaaa > 1:1071400/1‑231 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGAAAAAATTCaaaaaaaa > 1:199012/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGTAAAACTTACGAGaaaa > 2:1007184/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGaaaa > 2:676171/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATAACGTCGAAACCTTCTTCTTCACCTTTGGCGGGGATGGCATGCAAAACTTTAGAGaaaa > 1:851970/1‑239 (MQ=255) tatTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGTGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAAATTCTAGGAAAAC‑Cgg > 2:405727/1‑239 (MQ=255) cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTCCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGAGTCTATGCAAAACTTCAACAACAAA‑CGGATAAcc > 1:902141/1‑238 (MQ=255) gCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGttt > 2:189979/1‑239 (MQ=255) ccaccGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACgg > 2:1219566/1‑239 (MQ=255) ccGGAATATCATATTTATCGGGTTGGGAAAAAAATGA‑TCACTCCGTGGGGCAACTGAGCAAAATAATGCCTTTAATCATTTTCTGCTTATTTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTa < 2:1057574/239‑1 (MQ=255) tCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCa > 2:1108545/1‑238 (MQ=255) tatTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCTTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTCCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGCTAAACTTCAGAGAAAAA‑CGGGTTAACCACC‑GTAGTTTTggggtaaaggggtgaaaacaacaa > 1:928876/1‑217 (MQ=255) ttATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAt > 2:552028/1‑239 (MQ=255) aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGATCATAATAATGCCTTTAATCATTTTCTGCTTAATTGTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTTCGACGTTTGTAATATCCCGTCGTAACCTTCTTCTTCAGCGTTGGAGGGGGTGGCATTCAAAACTTAAGGGCAAAA‑CAGATAACCCGCC‑GTAGTGTTGGCGGAACAAGAAGAAAtacccaaaaggg > 1:1065707/1‑228 (MQ=255) aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGGATGCAAACCTTCAGGGAAAAA‑CGGATTCCCCCCC‑TGAATTTTGGTCGAACGGGtgaaaaaacacaaaaagg > 1:738582/1‑222 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCa > 2:167846/1‑239 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTACTTTTGTCCGAACGGGAAAAAAAAACCAAAAT‑GGCa > 1:93901/1‑239 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCATCTTCAGCTTTGTCGGTGAGGGCGTGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCG‑GGAGTTTTGTTCGAACGGGTAGAAAtaaaaaaaaaggaa > 1:294173/1‑226 (MQ=255) gAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGCTTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCCGCTTTGGCGGCGATGCTATGGAAAACTTCCGAGACAAA‑CGGATTACCCACCGGTGTTTTTGGTC‑AACGGGGAGAAATCACCaaaaagagct > 1:261425/1‑233 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTTCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCAAGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCCCC‑GTAGTTTTGGGCGAAAGGGTAGaaaaccacaacaaagcaatca > 1:843781/1‑221 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGTTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt < 2:342781/189‑1 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCCAAACTTCAAAGAAAAA‑TGGATTACCCCCC‑GTTGTTTTGGGCCAAACGGTAGAAAACACCACaaaaccaaaca > 1:544640/1‑230 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGGGAAAAA‑CGGATTTCCCGCC‑GTAGTTTTGGTCGAAAGGGTAGAAAAAACCAAAAT‑ggaaaaaa > 1:128759/1‑233 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt > 1:342781/1‑189 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTAGAAACCTTCTTATTCGGCTTTGGCGGGGCTGGCTGACAAAACTTCATAGAAAAA‑CGGATTACCCACC‑GCAGTTTTGGTCGAACGGTGAGaaaaaaacaaaaaggcaaaaa > 1:1314287/1‑221 (MQ=255) gggCAAAAAAGGCCTCA‑TCGGCGGGCAAACTGAAAATAATAATGCCTTAAATCTTTTTCTTTTTAATTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGGGACGTTTGAAATACCACGGCGAAACTTTCTTCTCCAGTTTTGGGGGTGATGGCAGGAAAAACTCAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCaaa < 2:851970/238‑1 (MQ=255) gACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAAAggc > 2:1035964/1‑238 (MQ=255) aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTTCCCGCC‑TTAGTTTTGGTCGACAGGGTAGAAATCACCAAAAT‑GGCACAAAAAACCGAAAAGGGTAGGGC‑GC‑GGGCCAga > 1:1003052/1‑238 (MQ=255) aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCa > 2:115869/1‑237 (MQ=255) gAGTATAATAATGCCTTTAATTATTTTCTTTTTAATTTTGTTTTCCCTTTTTTGCAGATCTTCTGCCGGATTGGGCGACGTTTGAAATATCACGTCAAACCTTTCTTCTCCGGTTTTGGGGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGt < 2:635890/239‑1 (MQ=255) taatGCTTTTAATCTTTTTCTGTTTATTTTTGCTTTCCTATTTTTGCAGATCTTCTGCGGGATTGTGCGACGTTTGAAATATCAGTGCGAACCTTTCTTCTTCAGTTTTGGGGGTGAGGGCTGGCAAAACTTCAAAAAAAAA‑CGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGa < 2:199012/239‑1 (MQ=255) taatCCCTTTAATCATTTTCTTTTTATTTTTGCTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACTTTTTAAATTCCACGTCGAACCCTTCTTCTTCAGTTTTGGCGGTGATGGCATGAAAAACTTCAGAAAAAAC‑CGTATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGa < 2:128759/239‑1 (MQ=255) tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCCCGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCCAAGACAAA‑CGGATTTCCCGAC‑GTGGTTTTGGTCGAACCGGCAGAAATACCCCTAAT‑GGCACAAAAACCCGAAG‑GGTGAGCGCAGC‑GGGTCAGCtgttatggatgaaca > 1:1183959/1‑225 (MQ=255) tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGGTGGCATTCAAAACTTCAGGGAAAAA‑CGGATTACCAGCC‑GTAGTTTTGGCTGCACCGGTAGAAAACATCCACAT‑GGCATTCAAACCCGAAGGGGTACACGC‑GG‑GGGCCacacttttgtgtgaaaac > 1:50231/1‑222 (MQ=255) tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGAt > 2:1005064/1‑237 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTATTATAACTTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGCTAAACTTCAGCAGAAAT‑CGAATTACCCGCC‑GTAGCTTTGTTCGACTTGTTAGTAATCACCCTAAT‑AGCATCACAATCCGAAGAGGTCATCAC‑GC‑GAGCCACCCTGCTTGGCTggatcgt > 2:91143/1‑233 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTCGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGAt > 2:150392/1‑235 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGGCAGCCC‑GC‑GGGCCCGCTTGTTTGGCTGAAACTg > 2:149865/1‑239 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑TGCATCAAAACCCGAAGAGGTCA‑CCC‑GCGGGGCCAGCTTGTTTGGGTGGTaaag > 1:1291302/1‑236 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GGAGTTTTGGTCGAAGGGGGAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGA‑CC‑GGGCCAGCCTGTTTGGccgcaactg > 2:1286818/1‑231 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:489449/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:1261537/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCAGAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑CC‑GGGCAAGCTTGTTTGGCTGATACTGTaa > 2:765702/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGGTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGCCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:1064123/1‑239 (MQ=255) taaattgttttCTGTTTAATTTTTGTTTCGTATTTGTTCAGTTCTTCGGCGGGTTTGTGGGACTTTTGAAATATCCCGTCAAAACCTTCTTCTCCAGTTTTGGGGGTGATGGCATGCAAAACTCAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa < 2:693657/232‑1 (MQ=255) aaTCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGGAAtt > 2:1070691/1‑239 (MQ=255) cTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACttt > 2:1174247/1‑239 (MQ=255) tCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATTGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGATCGGGTAGAAATCACCATAAT‑GGCATCAAAAACCGAAGAGGTCAGCGC‑GC‑GGGCCAGCCTGTTTTGCTGATACTGTAATTCTTCAATGGGCCGGAAACCTTTTTc > 1:811084/1‑239 (MQ=255) cGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGTCTGATACTGTAATTCTTAAATGGCCCGGAAAACTTTTTc > 1:928133/1‑238 (MQ=255) ttgttGCAGATCTTGTGGCGGTGTGTGGCACGTTTGAAAATTCCCGTCAAACCCTTCTTCTGCAGTTTTGGCGTGGAGGGAATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTcgcgcg < 2:843781/236‑1 (MQ=255) aGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGt > 2:328534/1‑164 (MQ=255) aTCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATTCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCCAAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGGAACTGTAATTCTTCAAAGGCCCGCAAACCTTTTTTCGGGGCTTCCcggg > 1:849119/1‑239 (MQ=255) gattggggcggcgTTTGAAAACTCACGCAGAACCCTTTTTCTGCGGTTTGGGGGGTGATGGCATGAAAAATTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAg < 2:544640/231‑1 (MQ=255) tggggCGACTTTTGGAATACCACGTCGAAACCTTCTTCTTCAGCTTGGGCGGTGAGGGCATGAAAAACTTAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTg < 2:93901/235‑1 (MQ=255) tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGGTACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCtt > 2:651046/1‑239 (MQ=255) ttttTAATATCCCGCCAACACCTTTTTCTCCATTTTGGGCGTTGATGGAATGCAAACTTTAAAAAAAAAA‑CGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAg < 2:738582/238‑1 (MQ=255) aaaaTACCACGGAGAAACCTTCTTTGTCAGGTTGGGCGGTGAGGGCATGAAAATCTTAAAAAAAAAG‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑Acg < 2:1095974/237‑1 (MQ=255) cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATa > 2:491543/1‑239 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGAATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑GGCCTCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCAAGCTTGTTTGGCTTATCCTGTAATTCTTCAATGGCCCGGAACCCTTTTTCGCGCGCTTTCGGGGGGAAATTAGATTGGTTTTTCAGA‑Acgctgtaacgg > 1:744682/1‑231 (MQ=255) aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACCTTTTCGCGCGCTTCCGGGGAGCTATTAGTTTGCTTATTCAGC‑ACCCGGGTTACgtcg > 2:139133/1‑234 (MQ=255) tcttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGGGC‑GC‑GGGCCAGCTTGGTTGGCTGATACTGTAATTCTTCAATGGCCCGGAACACTTTTTCGCGCGCTTTCGGGGTGATATTAGTTTGCTTATTCAGA‑Ccgcggggatatgggggttttgt > 1:339293/1‑221 (MQ=255) tcttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCCGGATACGGTGGAttttta > 2:196407/1‑237 (MQ=255) tttgttcAGCGTGGGGGGTGATGCAATACAAATCTTAAGAGAAAAC‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 2:744682/235‑1 (MQ=255) tttcttcCGTTTGGGGGGTGAGGGGATGAAAAACTTCGAAAAAAAC‑CGGTTCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 2:647738/238‑1 (MQ=255) aGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACg > 2:901573/1‑236 (MQ=255) gCTTTAGCGGTGATGGCATGCAAAACTTCAGAGAAAAC‑TCGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGAATCAAAAACCGAAGGAGTCAGGGC‑GC‑GGGCCATCTTGTTTGGCTGATACTGTAATTATTCAATTGCCTGATCCACATTTTCTGGGGCTTCCGGGGGGGTCTTGATTTGCTTTTTAGCCAATGCG‑GTTACGAGGGATTTTGATAGGCCTGc > 1:278121/1‑239 (MQ=255) ggtgtcctgaaaaacCTTAAGAAAAAAA‑CTTATTCCCCGCC‑GTAGTGTTGGGCGAACGGGTAAAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:651046/228‑1 (MQ=255) gATCGCATGCAAACCTTCAGAGAAAAC‑AGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATGCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:261425/238‑1 (MQ=255) tgtgggttgaaaaATTGAGAAAAAAATGGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:552028/229‑1 (MQ=255) gggCATACAAAGCTCAAGAGAAAAC‑CGGTGTTCCCGCC‑GGAGTTTGGGTCGAACGGGTAGAAACCCCCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:602586/238‑1 (MQ=255) ggaaTGAAAACCTTAAGAAAAAAC‑GGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:339293/235‑1 (MQ=255) ggaaTGAAAAACTTAAGAAAAAAA‑CGAATCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:1291302/235‑1 (MQ=255) tgataacgttCAAAGAAAAA‑CGGTTTCTCCGCC‑GTACTTTTGGTACAACGGTGAGAAATCACGAAAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGC‑GC‑GGGACTGGTTGTTTGGCTGATGCTGTAATTATTCAATTGCCCGTAACACTTTTTCGTGAACTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGGCTGCAACCCTGGAAATAGCAt < 1:58352/230‑1 (MQ=255) cAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCTCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCCGC‑ACGCGCGATCCGGGGGCTTTTGATACGCCTGCAACCCTGGCAaaatagaaaa > 1:1007842/1‑233 (MQ=255) | GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |