Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,435,725 | C→A | 18.0% | intergenic (‑106/+35) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,435,725 | 0 | C | A | 18.0% | 188.6 / 5.5 | 77 | intergenic (‑106/+35) | uspF/ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
Reads supporting (aligned to +/- strand): ref base C (57/5); new base A (2/13); total (59/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.21e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGT > NC_000913/1435488‑1435953 | cAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCa > 2:263386/1‑239 (MQ=255) tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGaa > 2:1112888/1‑239 (MQ=255) aaGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGaaaa > 2:867975/1‑239 (MQ=255) aaGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAAAAAGCAGaaaa > 1:148608/1‑239 (MQ=255) ttACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑ccc > 2:703732/1‑238 (MQ=255) aCCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCCTAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGACCGT‑TGACACTTTTTGTGT‑AATGACGGGGTTCCCATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAAAAAACAGAAAAAG‑cccccc > 1:603374/1‑239 (MQ=255) aCCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTGTCCGAATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCCAA‑AGAGGAAGAATAAGCAGAAAAAG‑CCCGcc > 1:756970/1‑239 (MQ=255) acAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACAATTTTTGTGT‑ACTGACGGAGTTCCAGTTTTT‑AAT‑TTAGAACAAA‑GGAGGAAGAATAAAAAGaaaaaaacaccaatac > 1:1144330/2‑228 (MQ=255) aGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACa > 2:211675/1‑239 (MQ=255) ccaccatttttggCCTCTTCCTCATGGTGGTTAACCACGTGTGGAGTTAATTCTGAACCGAAAATATCGATAGGGAAAAGATTGGTTCTTTAAAAAAACCCTCTTTTTTTAGTACCCGAAAAAAGTGTACCGCAAGA‑TGAC‑TTTTTTGGGTAAATGGGGGAGTTCACATTTTT‑AAT‑TAAAAAAAAA‑GGAGGAAGAAAAAGCAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAg < 2:11755/227‑1 (MQ=255) tcaATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGa > 2:883427/1‑237 (MQ=255) aTCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAAAAGCGGGCAGGAGGATTTAGAAATGa > 1:11755/1‑239 (MQ=255) tGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGCATAAGCAGAAAAAA‑CCCCACAAAAAAGCCGGCAGAGGGATTTaaaaagaaaaaaa > 1:912271/1‑230 (MQ=255) cgcttctctcTCAACGTGGCTATCCACGTGTTGATTTAATTTTGAATGGAAATTATGGAGAGGGAAAAAAATGGTTCTGTTAAAAAACCCTCTTTTTTTAGTCTCCGAAAAAGGTTCAACCCAAAA‑AGACATTTTTAGATT‑AAGGAGGGAGTCAACATTTTT‑AAT‑TAAGAGAAAG‑GGAGAAAAAAAAACAAAAAAAAC‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc < 1:766441/230‑1 (MQ=255) aaCGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGTAACTTTTTGTGT‑AATGCCGGGGTTCCCATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAAAATAAGCAGAAAAAG‑CCCGCCATAAACACGGGTGGGCGGATTTAGAACTTATAAACCACACCaaaaac > 1:668631/1‑237 (MQ=255) tGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACa > 2:962956/1‑239 (MQ=255) tGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAAAAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAACCGACa > 2:981491/1‑239 (MQ=255) gCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAATAATCGTTCTGTTAATAAAACCTCCTGTTTTAGAATCAGCATAAAGTGGAACGCCAGA‑TGACACTTTTTGTGT‑AATGCATGCGTTCACATTTTT‑AAT‑TTAATTCCAA‑AGAGGAGAAATAAGAGAAAAAAG‑TCCGCCATAACAGAGGGCAGAAAGATGTAGAACTGATAAACCAGAACCaaaacacaaca > 1:747165/1‑231 (MQ=255) gCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAAACCTAAAGCGACAat > 2:1280502/1‑239 (MQ=255) caaaccACGCGTGGATTTAATCCAGAATCGGAAATACCGATAGGGACAAGAATCGTTCTGTTCATAAACCCTTGTTTTTTATTACCCGCATAAAGTGTAACGCAAGA‑GGACACTTTTGGTGT‑AATGAGGGATTTCACATTTTA‑AAT‑TAAGACAAAA‑GGAGGAAGAAAAAGCAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAat < 2:527543/233‑1 (MQ=255) taatccggtgTTGATTTAATTCAGAATGGGAAATATCGATAGGGAAAAGAATCGTTTTTTTAAAAAACCCTCCTTTTTTAGTACCCGAAAAAGGTGTAACGCAAAA‑TGACATTTTTTGGTA‑AAGGACGGAGTTCACATTTTT‑AAT‑TTAGACAAAA‑GGAGGAAGAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAatat < 2:1092016/230‑1 (MQ=255) cgTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAAACCCAAAGCGAAAAAATAATCGGTa > 1:1092016/1‑239 (MQ=255) gAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCa > 2:902395/1‑239 (MQ=255) aaTCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAAATGATAAACCAAACCTAAAACGACAAAATAATCGGAAAAAATGCAAATGGAAg > 1:67846/1‑239 (MQ=255) aaTCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAAAAGCGGGCAGGAGGATTTAGAACTGATAAAACAGACCTAAAGCGACAAAAACATGGGTaactgtcccttaaaaaa > 1:635705/1‑223 (MQ=255) gAAATATCGTTAGGGACAAGAATCGTTCTGTTCATAAAACCTACTGTTTTAGTATCCGCATAAAGCGTAACGCCAGA‑TGTCACCTTTTTTGT‑AATGACGGTGTACACATTTTT‑AAT‑TTAGATCAAA‑GTAGGAAGAATCAGCAGAAAAAG‑CCCGCATTAACAGCGGCAAGGAGGATTTAGAACTGCTAAACCAGACCTAAACCGCCAATACCAACGGTAAAGATTCAAATagcagcagaa > 1:518394/1‑235 (MQ=255) atCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAAA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAACGACAAAACAATCGGGAAAGATTCCAAAGGCAACGAAAAAgag > 1:508539/1‑237 (MQ=255) aGGGACAAGACTCGTTCGGTTTATACCACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCACA‑TGACCCTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCACA‑GGCGGAAGACTAAGCAGAAAAAG‑CCCGCCATAACAACGGGCAGGAGGATTTAGAACTGAAAAACCAGACCTAAAGCGACAATATCCTCGGTAGAAATGCCATAGGCACGGTAAAAGcaggaaaa > 1:673833/1‑232 (MQ=255) aGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGCCAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCa > 2:1238811/1‑237 (MQ=255) aCAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGC‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAC‑GGAGGACGAATAAGCAGAAAAAC‑CCCGCCATAACAGCGGGACGGAGGATTTAGAACATATAAAACAGACATAAAACGACAAAATCGACGGTAGAGAAGCAATTGCCaagcacaaactgggacacttca > 1:1302953/1‑218 (MQ=255) aCAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCa > 2:1228476/1‑239 (MQ=255) cAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCACCTTAGAAGCTGTAACCTTct > 2:176085/1‑237 (MQ=255) gTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAgg > 2:1277367/1‑239 (MQ=255) ttttGTTTATAAAACCTTTTTTTTTATTACCCAAAAAAAG‑GTAACGCCAAAGTGACATTTTGTGAGA‑AAGGAGGGACTTC‑CATTTAT‑AAA‑TTAAAAAAAAGGGAGAAAGAATAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt < 1:981491/236‑1 (MQ=255) cTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACATCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCGGGCATCTTCATCCAACAGGTTg > 2:359270/1‑239 (MQ=255) ttCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAAAAAATGTAATCTTCATCAAACAGGGTGAtt > 1:977890/1‑239 (MQ=255) aaccctttttttttttttATCCTCAAAAAGGGTACCGCAGGA‑GGATATTTTGTGATT‑AATGACGGATTCCTCTTTTTA‑AAT‑ATAGAACAAG‑GGAGGAATAAGAA‑CAAAAAAAGCCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTtata < 1:1219598/222‑1 (MQ=255) aaaaCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGAAGGAGGATTTAGAACTGACAAACAAGACCTAAAACGCCCATATCATCGGTAGAGGTGCCATTGGCAGCGTAGAAACTGGCACCTTAATCCAACAgggtactttataa > 1:327259/1‑228 (MQ=255) ccctcatTTTTTAGTCCCCGTAAAAAGTGAAACCCAAAG‑TGACTTTTTTTGTGA‑AGTGGCGGATTCCACTTTTTA‑AAT‑AAAAACAAAA‑GGAGAAAGAAAAAGCAAAAAAAG‑ACCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTc < 2:259498/238‑1 (MQ=255) ctcctGTTTTAGTATCCGCATCAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGCAGAATAAGCAGAAAAAG‑CCCGCCCTAACACCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTTGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTAATCCAAAAGGTGGacatttaatcaaa > 1:259498/1‑227 (MQ=255) ctcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCaa > 2:487451/1‑239 (MQ=255) ctcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTACTCTTAATCCAAAAGGTTGATTTtaaaataaa > 1:36824/1‑232 (MQ=255) cctGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGCCAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGCTTTTATAGTCAACg > 2:92408/1‑239 (MQ=255) cctGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCAACGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATTTTCATCCAACAGGCTGACTTTATAGTCAACg > 2:663277/1‑239 (MQ=255) aTCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGAGCAGGAGGATTTAGAACTGCTAAACCAGACCTAAAGAGACAATATCATCGTGAGAGATGCCCTTGGCAACGTAGAAGCGGTCACCTTCATCCAACAGGTTGATTTTATAGTGaaaaaagagggaaag > 1:691616/1‑226 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGtt > 2:93879/1‑239 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGtt > 2:16498/1‑239 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGtt > 2:203435/1‑239 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAACCGACACTATCATCGGTAGAGAAGCCATTTGCACCCTACAAGCTGTCAACTTCATCCAAAAGGTTGATTTTATAATCAACCAACGGGGACAtttt > 1:376421/1‑239 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCA‑ACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGttt > 2:1200866/1‑239 (MQ=255) cGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACAAGACCTAAAACGACAATATCATCGGTAGAGATGCCCATGGCAGCGTAGAAACTTGCATCTTCATCCAAAAGGTTGAATTTAAAGTCAACGAAGGGGGAACTGtt > 1:996726/1‑239 (MQ=255) aaaaGTTAAACGCCAGA‑GAACATTTTGTGTGA‑AAGGGCAGAGTTAACTTTTTT‑AAT‑TAAGATAAAA‑GAAAAAAAAAAAAGAAGAAAAGG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTa < 2:318592/238‑1 (MQ=255) aaaaGGGAAACGACAGA‑GGACTCTTTTGGTGA‑AAGGACGGAGTTCAAATTAGT‑AAT‑GAAGATAAAG‑GGAGAAAGAATAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTa < 2:112920/238‑1 (MQ=255) gaaaaCCCCAGA‑TGAC‑TTTTTTGTGTAAATGGCGGAGTTACAATTTTA‑AAT‑TAAAAACAAA‑GGAGGAAGAAAAAGAAAAAAAGG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTg < 2:508539/234‑1 (MQ=255) tAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGAACTGTTTTTATTGAAAt > 2:306574/1‑239 (MQ=255) aCGCCAGA‑TGACAATTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCCGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGAAGAAGCTGTCATCTTCATCCACCAGGTTGCTTTTAAAGTCACCGTAGGTGGACAAGTTTTTTTTGAAATAg > 1:1067460/1‑239 (MQ=255) aGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTAAAGTCAACGTAGGGGGACATGTTTTTATTGAAATAGTAAg > 2:596488/1‑238 (MQ=255) gA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAT‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTCGAGATGCCATTGGCAACGTAGAAGCTGTCATCTTCCTCCAACACGTTGATTTATAAGTCAACGAAGGTGGACAGATTTTTATTCAAATAATAAggt > 1:453442/1‑237 (MQ=255) gA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGTGGGCAGGAGGATTTAGAACTGTTAAACCAGACCTAAACAGACAATATCATCGGTAGAGTTGCCATTGGCAGCGTCGAACCGGTAATCTCACTCCAAAAGGTTGATTTAATAGTAAACGAAGGTGGACAGGTTTTTATTTAAAAAGAAAGta > 1:858304/1‑238 (MQ=255) ttttGTGT‑AAGAGCGGATTTCATATTTTT‑AAT‑TTAGACAAAA‑GGAAGAAAATAAAGAAAAAAAAC‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAata < 2:912271/239‑1 (MQ=255) tttGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAatat > 2:1210015/1‑239 (MQ=255) ttaaatagacgAGTTCACATTTAT‑AATGTGATATAAAA‑GAGAGAAAAAAAACAAAAAAATC‑CCCGCCATAACTGCGGGCAGGAGGATTTAAAACTGAGAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCgg < 1:388107/229‑1 (MQ=255) atagtggATTTCATTTTTTT‑AA‑‑TTAAATAAAAGGGAGAAAAAAAAAAAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt < 1:204728/234‑1 (MQ=255) aagACGGATTTCACTTTTTA‑AAT‑TTAGATAAAA‑GGAGGAAAAAAAAGCAAAAAACG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt < 2:36824/237‑1 (MQ=255) gAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAAcc > 2:204728/1‑239 (MQ=255) gTTTACATTTTTAAAT‑TTAGAAAAAA‑GGAGAAAAAAAAAGAAAAAAGAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAAcc < 2:481592/238‑1 (MQ=255) ttCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGCTTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCACGCCAATATCGGCGTATTTAAcccaa > 2:698634/1‑236 (MQ=255) ttCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGa > 2:1203870/1‑239 (MQ=255) ttt‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAACTAGTAAGTTGCGCCAATATAGGCGAATTTAACCAGATCTTTatc > 2:1174844/1‑239 (MQ=255) ttt‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGAATTTAACCAGATCTTTgtc > 2:680864/1‑239 (MQ=255) aT‑TTAGAAAAAA‑GGTGGAAAAAAAACAAAAAAACC‑CCCGTCAATAAAGCGGGCAGGAAGATTTAGAAGTGAAAAACCAGCCCTAAAGCGACAATATCATCGGTAGAGATGACATTGGCAGCGTAGAAGCTGTCATTTTCATGCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTAtcatca < 1:962956/239‑1 (MQ=255) ttaaaaaaaaa‑GGGGAAAAAAAAAGAAAAAAAAC‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCaa < 2:67846/231‑1 (MQ=255) gATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGAGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAAATTTTTATAATAAaaac > 1:408133/1‑238 (MQ=255) gaggaAAAATAAGAAAAAAACG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCgg < 2:977890/237‑1 (MQ=255) gaagaaTAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGTGCCAATATCGGCGAATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGt > 2:1168158/1‑239 (MQ=255) gaagaaTAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTg > 2:943356/1‑238 (MQ=255) gaagaaTAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTACAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTCTAGCCAACGTAGGCGGACATGTTTTTTTTGAAATAGTAAGTCGCGCCAACATCGGCGTATTTAACCAGATCTTTATCAAAAAAACCAACCGGGtggc > 1:656546/1‑236 (MQ=255) | CAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGA‑TGACACTTTTTGTGT‑AATGACGGAGTTCACATTTTT‑AAT‑TTAGATCAAA‑GGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGT > NC_000913/1435488‑1435953 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |