| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,466,210 | G→A | 6.8% | pseudogene (819/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,210 | 0 | G | A | 6.8% | 206.2 / 5.0 | 89 | pseudogene (819/2513 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base G (34/48); new base A (3/3); total (38/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGG > NC_000913/1465973‑1466445 | cacTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGa < 2:515409/239‑1 (MQ=255) ttgtgtgccgcgagggggTGGGCGAAGATGGCGGATCGAAGCAGCAAAATAAACACAGCGGGGAGGAGCTAATGAAGGGGGATAATGCCACGGTAAACAACAATGGCAAAGCCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATTACCGGCAATAGCGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACg < 1:812576/225‑1 (MQ=2) gtGTTGCCCTGCAAGGGGTGAGCCCAGAGGGCCCAAATGATGGGCAGTATAATCACAACGGTTAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACTGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCTGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGGGAc < 2:473092/237‑1 (MQ=18) cttttggctttGAGGGGGGGAGCGCAGATGGCACAACGAAGGGGGAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCGCCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATTACGGGAAAGGTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACg < 1:482249/230‑1 (MQ=21) ttGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGCACGGAAATCAACGGTAATAACGGGAAAGTGATTAAGGACGGCGACCTGGATGTCGCCGGCGGCGGTCACGGGTTTGCTATCACCGGCGGCAGCGCCACgggg > 1:828097/1‑237 (MQ=255) cccTTGAAGGGGTGGGCGGAGATGGCGCAACGAAGGGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGAt < 1:58222/239‑1 (MQ=255) cccTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCACCGGCGGCGGGCACGGTATTGATATACCCGGGGCAAGCGCAACGggggct > 2:812576/1‑237 (MQ=25) ccTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGAt < 2:46969/238‑1 (MQ=255) cTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGGGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGGGCAAGCGCGCCGGGGGGTac > 2:347486/1‑238 (MQ=25) cTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGCAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTACCGGGATTGGTATTCACGGTGACAGCCCGACGGGGGGTaa > 2:83990/1‑239 (MQ=25) gggcgcAGATGGCGCAACGAATTGGCAATTTAATCACAACGGTGAGCTTTGTATTACGGGTGATAAGGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCa < 2:751350/237‑1 (MQ=255) aGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGGGCCAGCGCGACGGGGGATAACAAGGGGACCAt > 2:974526/1‑239 (MQ=255) cgcAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTACACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCAGGGGAATGGTAGTCCCGGTGGAAGGGCGGCGGGGGACAACAAGGGccccttt > 2:568175/1‑235 (MQ=21) cAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGAAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCATCGGCGCCGGTCCCGGCATTGGTATCACCGACGACGGCGCGACGGCGGATAACAAGGGCACCATTAcc > 2:839780/1‑239 (MQ=21) aggcaaaaCGAAGTGGTCATATAATCACAACGGTGAGATTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGt < 2:1184228/231‑1 (MQ=255) gaaaGTGGCAATTAAATCAAAACGGTGGGGTTGTTTTTACGGGTGAAAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 1:535456/237‑1 (MQ=255) cGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 2:297063/239‑1 (MQ=255) cGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGGCATAATGCCACAGTAAACAACAATGACAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGTCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 2:356449/239‑1 (MQ=255) cGAAGTGGCAATATAATCAAAACGGTGAGCTTGTTATTAGGGGTGATAAGTCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATGCCACCGGGACGGAAATCAACGGTAATAACGGGAAAGTGAATCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 1:862512/239‑1 (MQ=255) cGAAGTGGCAATATAATCAAAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 2:335947/239‑1 (MQ=255) cGAAGGGGAAAGATAATAACAACGTGTATCTTGTTATTACGGGTGATAATGTCACAGTAAACAACAATGGCAAAACCACCGTGGACTGGAAAGGTTCCACCGGTACGGAAATCAACGGGAATAACGGGAAAGGTATTCAGGCCGGCGATCTGGAGGTCAGCTGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 1:581785/239‑1 (MQ=17) tagaggtgtaaaagggaaagaCGGGGAGTTTGTATTTACGGGTGATAATGCCAAAGTAAACAACAATGGCAAAACCACAGTTGACGGTAAAGAGTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCGTGACCGTCACCGATCCg < 1:981645/218‑1 (MQ=17) aaGTTGCAATATATACTCACCGGTGGTCTTTTTATTACGGGTGATATGTCCACAGATACCACCGAGGGCAAAACCACCGTTGACGGGAAAGATTCCACCGGTCCGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGTTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 1:568175/237‑1 (MQ=14) aaGTGGCAATTTAAAACCAACGGGTAGCTTGTTATTACGGGTGAGAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGTTCCAACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg < 1:784771/237‑1 (MQ=17) ttgaaaaattaTCACAACTTTGACATTGTTATTACGGATGAAAATGTCAAAATAAACAACAATGTTAAAACCACCGTTGACGGTAAAGATGCCACCTGTACGGAAATCAACGGTAATAACGGGAAAGTGATGAAGGACGGCGATCTTGATGTCAGCGGCTGCAGTCACGGTATTGATATCGCCGGTGACAGCGCGACGGTGGATAACAAGGACACCATGACCGTCACCGATCCAGAGTc < 1:136609/229‑1 (MQ=255) ggCAATATAATCACAACGGTGAGCTTGTTTATACGGTTGATAATGACCAAGTAAACAACAAGGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTc < 1:966502/238‑1 (MQ=255) gcaacactcaTCACCGCGGTGGGCTTTTTATTACGGGGGATTACGCCCACGCAAACACAAATGGCAAAACCAACGTTGACGGCAAAGATCCCACCGGTACGGAAATTGTCGGCAATAACGGGAAAGTGATTCAGGACGGCGATCGGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTc < 1:974526/229‑1 (MQ=11) cAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCAACGGTGGATAAAAAGTGTACCATGACCCCCAccccgccgcagcc > 2:988190/1‑225 (MQ=18) aTCACAACGGTGAGCTTTTTATTTCGGGTTAAAATGCCACAGTAAACAACAATGGCAAAACCACCTTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATc < 1:114332/239‑1 (MQ=255) cacaACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGGAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGAGGGCACGGAATTGAAATTACCCGTGACAGCGCGACGGTGGGACACAAAGGCACCCTGACCGCAACCGAACCCGAGTCCAAggggaaaac > 1:707603/1‑233 (MQ=18) aGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGCCCCCGATCCGGAGGCCATGGGAATCCGGATCGCCGGt > 2:1248343/1‑239 (MQ=255) gtttattgTGGGTGATAATGCCAAAGGAAACAAAAATGGAAAAACCCCCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACa < 1:733635/237‑1 (MQ=255) gTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGAATCACGATCGACGGGGGCaa > 2:1029055/1‑239 (MQ=255) gTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGTGACAGGGCGCCGGTGGATAACAAGGGCACCGTGACCGTCACCGATCCGGAGTCCATgggcgtgctcttatacacatctc > 2:981645/1‑218 (MQ=17) gTTAATACGGGTTATAATGCCAAAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGAcca < 2:828097/239‑3 (MQ=11) ttattaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGAAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTCTTGATATCACCGGTGACAGCGAGACGGGGGCTAACAAGGGCACCATGACCGTCACCGAACCGGAGTACATGGGTATCCAGATCGGCGGTGCCAAg > 2:703405/1‑239 (MQ=17) taCGGTTTAAAATGCCACAGTGAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCAGCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCa < 2:707603/239‑1 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGAATTGATATCCCCGGTCACAGACCGACGGCCGAGAACAAGGGACCGATGACCGTCACCGATACGGAGTCCTTGGTTAACCAGAACACCGGTGACAAGGCCATCGTc > 2:604211/1‑239 (MQ=17) tGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGTGACAGCGCGACGGGGGGTAAAAAGGGCACCATGACCGTCACCGATCCGGAGTCCATgg > 2:261192/1‑206 (MQ=255) agaaaaggCCACCGTTAAAAACAAGCGCCAAACCCCCGTGTGCCGTAAAGATCCCTCCGGTAGGGGAAATAGAGGTAATAGAGGGGAAGTGATTCAAGACCGCGAGCGGGAGTTCAGCGGGGGCGGTCGAGGGATGGAGAACACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCAATGGGTATCCAGATCGACAGTGACAATGCCATCGTc < 1:703405/231‑1 (MQ=9) ccACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTCGACGGAGACAAGGCCCTAGTCAATAAccac > 2:1178471/1‑236 (MQ=255) aactacatagcaaTTGCCAAACACCCGTTGACGGTAAAGATCCCCGCGGGTCGGAAAGCGACGGTAATGACGGGAAAGTGATTCAGGAGGGCGAACTGGATGTCAGCGGCGGCGGTCACGGTATTGAAATCACCGGTGACAGCGCGGCGGTGGATAACAAGGGCACCATGACCGTCTCCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCCATAACGAAGGc < 1:357468/229‑1 (MQ=17) tAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCaa < 2:723240/226‑1 (MQ=255) tAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCACTAACGCAGGCgag > 2:211488/1‑239 (MQ=255) tGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGAACCGGAGTCCATGGGTATCCAGATGCACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATc > 2:515975/1‑238 (MQ=255) tGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGTGACAGCGCGACGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGGATCCAGATCCGCCGGGACAAAGCCCCCGCCAAAAAAAAAGGGgaggtcccttata > 1:723240/1‑229 (MQ=14) ccaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCCATCTGGATGGCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGt < 2:640308/239‑1 (MQ=255) tccGTTGGCGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTgg < 2:819622/238‑1 (MQ=255) ttGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGAc > 1:1248986/1‑182 (MQ=255) ttGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGAc < 2:1248986/182‑1 (MQ=255) ggTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGCCCATCGGCAATAACGAAGGCGACAGCACCATCACCAAcacgggcccccgca > 2:196000/1‑225 (MQ=11) ggTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCAGCGCCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCCTCACCGAACCGGAGTCCATGGGGATCCAGATCGACGGGGACAAGGCCATCGTCAAAAAAGAAGGCGAGAGCACAATCACCAACGAGggcaccgcca > 1:154390/1‑238 (MQ=17) tAAAGTTTCCCACGGTACGGGAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGACGTCGGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:347486/238‑1 (MQ=255) tAAAGATTCCGCCTGTACGGAACTCAGCGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 2:429196/238‑1 (MQ=255) tCCCCCGGTAAGGAAATCAACGGGAAAAACGGGAAAGTGATTCAGGACGGGGATCGGGATGGCAGCGGAGGCGGTCACGGTATTGATAACACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTa < 2:1248714/238‑1 (MQ=17) gtaggggAAAT‑AACGGGAAAAACGGGAAAGGGTTTCAGGCCGGCGATCTGGATGGCGAGGGCGGGGGGCACGGTATTGATATCACCGGTGACAGCGCGACGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat < 1:717332/234‑1 (MQ=17) aCGGTAATTACGGGAAAGTGTTTCAGGACGGGGAGCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCCCCGGTGACAGCGCGACGGTGGATAACAAGGGCCCCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCAGCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCa < 1:515975/239‑1 (MQ=255) taataaCGGGAAAGTTATTCAGGCCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCCCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCgaga < 2:1179482/179‑1 (MQ=255) cggtcGGGGATTTGGAAGTCAAGGGTGGGGGTCCAGGTTTTGATTTCACCGGAGGCAGGGCGACGGGGGATAACAAGGGCACCAGGACCGTCACCGATCCGGATTCCATGGGTAGCCAGAGCGACGGTGGCAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCAACAACGGTGGCACCGGGACCCAGATTAATGGTGATGAGGCCACGGAAAAC‑AACAACGGCAAAACCACCGtt < 1:83990/235‑1 (MQ=18) cggACGGGCATCTGGAGGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGtt < 2:1127326/238‑1 (MQ=255) cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAggg < 1:958946/75‑1 (MQ=39) cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAggg > 2:958946/1‑75 (MQ=39) tCTGGCTGTCCGCGGCGGCTGTCACGGTATTGATATCACCGGTGACCGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAg < 2:776731/238‑1 (MQ=255) ggcAGCGGCGGCGGTCACGGTATTGATATCCCCGGTGAAAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 2:592637/237‑1 (MQ=255) gTCAGCGGCGGCGGTCACGGTATTTATATCCCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 2:107203/239‑1 (MQ=255) aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTc > 1:762234/1‑86 (MQ=38) cggcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGGACCATGCCCGTCACCGATCCGGCGTCCATGGGTATCCAGATCGACGGGGACAAAGCCCTCGTCAATAACGACGGCGAGACCAACATCCCCAACGGAGGCACCGGCCACCAGCTTAAAGGGGATGAC‑CCACCGCCAACAAACACCGGCAAACCCACCCTTTACGGCAAGGATCCCACCggaa > 1:987181/1‑237 (MQ=14) gcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTa < 2:750394/87‑1 (MQ=255) gcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAAGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTa > 1:750394/1‑87 (MQ=255) tCACGGTATTGATATCCCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATc < 2:822353/238‑1 (MQ=255) caggTATTGATATCACCGGTTGCAGCGCGGAGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAc < 2:154390/237‑1 (MQ=255) tATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCCCCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAGCGGt < 2:695853/139‑1 (MQ=255) ttGAAATCCCCGGTGACAGGGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGAGCCGGATGCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaa < 2:987181/238‑1 (MQ=255) ttGAAATCACCGGTGACAGCGAGACGGGGGATAACAAGGGGACCACGACCGGCACCGATCCGGAGGCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaat < 2:561752/239‑1 (MQ=255) atCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGAACCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACgg < 2:346059/239‑1 (MQ=255) tCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCACCGGCAAAC‑AACAACGGCAAAACCTCCGTTGACGGCAAGGATTCCACAGGTACGGCAAACaaagccactaccgga > 2:1232769/1‑226 (MQ=17) tCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACAGTGGCACCGGCACCCAGGTTAATGGTGATGACGCCACGGCAAAC‑ACAAACCGCAAAACCACCGTGTACGGCACGGACTCCACCGGGACGCaaacaaaagggaaaaaagga > 1:346059/1‑222 (MQ=17) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAg > 1:195164/1‑57 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATc > 2:1289692/1‑69 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac‑aac < 2:562571/174‑1 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac‑aac > 1:562571/1‑174 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCGAAACCCACGTTGACGGCAAGGAATCCACCGGAAAGGAAATAAACGAAAAAAAAGGaaa > 1:662242/1‑239 (MQ=17) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCACAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGaaa > 2:1144488/1‑239 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACAACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGaaa > 2:468080/1‑239 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCAACGGCAAAC‑AAAAACGGCAAAACCACCGTTGCCGGCAAGGATTCAACCGGTACGGAAATAAACGGTAATACCGGgaa > 2:1172515/1‑239 (MQ=255) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGGGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGGTGCCGTAAAGGAATCCCCCGGTACGGAAACCACCGCAAGAAACGGaaa > 2:854519/1‑239 (MQ=17) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATAACCAACGGTGGCACCGGCACCCAGATTAATGGTAATGACGCCCAGGAAAAC‑AACAACGGAAAAACCACCGTTAACGGCAAGGATTCCACCGGAACCAAAATCAAGGGGAATAACGGcaa > 2:1262523/1‑239 (MQ=17) aCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGGGACAAGGCCATCGTCAACAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGCTTAATGGGGATGACGCCCCGGCAAAA‑AACAACAGAAAAACCACCGTTGCGGGAAAGAGTTCCCCCGGAAAGAAAAACAACGGGAAAAAAGGaga > 1:427732/1‑237 (MQ=17) ccAGCGCGACGGGTGATAACAAGGGCACAATGACCGTCACTGGGCCGGAGTCCAAGGGGAACCAGATCGACGGTGATAAGGGCATCGTCAATAACGAAGGAGAGAGCACCATCACCAACGGTGGCACCGGCATCCAGATTAAGGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTAtt < 2:139208/238‑1 (MQ=18) cgcgACGGTGGATAACAAGGGCACTATGACCGTCACCGATCCGGGGTCCATGTGCATCCAGAGCGACGGTGACAAGGCCATTGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGAACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAACCAACCGATGGAGGCCAGGCTGCCACCGGAACGGGAAAAAAAGGGAAAAACGGAAAAGTAAATCAga > 1:924293/1‑238 (MQ=17) cgcgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAg > 2:529419/1‑238 (MQ=255) | CACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGG > NC_000913/1465973‑1466445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |