| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,473,746 | T→G | 21.5% | pseudogene (3230/3497 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,473,746 | 0 | T | G | 21.5% | 106.3 / 3.2 | 51 | pseudogene (3230/3497 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base T (17/20); new base G (5/8); total (22/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATA > NC_000913/1473520‑1473978 | cTGGTACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTg < 2:442481/238‑1 (MQ=255) cGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGGGGACAGCATCGTCGGGCTGAAACTTGACTACGCAGGGCAAGACGGCCGGagggcc‑agc > 2:736724/1‑238 (MQ=255) cGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGAC‑TTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGGAACTGGCCTCACCCGGTACAGACGGCTGGagcgct‑agc > 2:473572/1‑237 (MQ=255) cGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGGCTACGCAGGGAAAGACGGCTGGAGGGCT‑AGCGCTACCCTGGAAGGCGGGCCGaa > 2:206996/1‑236 (MQ=255) cGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGGCGGGCTGAAACTGGACTACGCAGGGAAAAGAGGCCGGGGCGCC‑AGCGCTAGCCCGGAAGGCGGGCCCAAccc > 2:978076/1‑238 (MQ=255) aaGGGGCGAAGACTTTCCAACCGAGCGAAGGACTGAAGGTTACGCCATATGGGGGTGTAAAACTGCGTCACTCACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTa < 2:1179251/238‑1 (MQ=255) ttggAACCGGGGGAAGGACTGAAGGTTACGCCAGTGGCGGGTGTTAAACTGCGTCACACACTTGAAGGTGGCTATCAGGAGCGCAATGGCGGAGACTTGAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCg < 1:528563/236‑1 (MQ=255) cccGGGCGAAGGACTGAAGGTTACGCCATATGCGGGGTTAAAACCGCGTCAACCACTGGAAGGTGGCTAGCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACgg < 1:206996/238‑1 (MQ=255) aGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTgg < 2:1095165/239‑1 (MQ=255) aCTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGgca < 2:1116418/238‑1 (MQ=255) tGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGgcaggc > 2:1128103/1‑239 (MQ=255) ggTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGCACCTGAGCTACGCGACGAGCCAGCGGACGGCAAACCTGGCAGGGGCAGGCAGTCAGCCCTTTaa > 2:172163/1‑239 (MQ=255) tAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGGAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCGACGCGAAGAGCCAACGTACGGCAAGCCGTGCAGGCGCAGGCAGGCAGCACTTTAACGTc > 2:1097622/1‑239 (MQ=255) ggAAGTGGGCTATCAGGAGCCAAATGCCGGAGTCTTTAACCTGAATATGAACGGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGggcg < 2:586840/239‑1 (MQ=255) ggTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCCGGTAAAGACGGCTGGGGCGCTAAGCG‑TACGCTGGAAGGCGGGCCCAACCCGAGCTCACCGAAGAGCCACCCGACGGCAAGCCAGGCAGGGGCAGGCGGCCAGCACATTAAAGTCCATggaggtaaaaaagggggggg > 1:287455/1‑220 (MQ=255) gTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGGACGGCAAGCCTGGCAGGGGCAGGCAGTCAGCCCCTTAAAGTCGGTGACGGGCAGAAGggcggcggc > 2:1254202/1‑239 (MQ=255) gCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCCGGCCTTTAACGTCGGTGACGGTCCGAAGGGCGGCGGCATc > 2:598289/1‑239 (MQ=255) tgttgaaaagaggcgagCCGAAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGTACAGCATCGTCGGGCCGAAACTGGACTTCGCAGGGAAAGACGGCTGGAGCGCG‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCATTCAGCACTGTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCa < 2:797855/223‑1 (MQ=255) cTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCCTcc > 2:1047462/1‑238 (MQ=255) gAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGGAAGCATCGTCGGGCTGAAACTGGACTACGCCGGGAAAGAAGGCTGGAGCGCT‑AGCGCTACGCTGGGAGGCGGGCCGAAACTGAGCTAAGCGGAGAGCCAGCGGTCGGCAAGCCCGGCCGGGCCCGGCGGGCACCACTTTAACGTGGCGGACGGGCCGAggggggggggagccaaaaaaca > 1:1285445/1‑227 (MQ=255) ggccgaatcTTTAACCTGAATTGGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGCCGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGt < 2:1303625/231‑1 (MQ=255) aggttttAACCCGAAAGAGAACCGTGGCAGGGAAACGGCGGTGGACAGCCTCGGCGGGCTGAACCTGGACTACGCAGGTAAAGGAGGCTGGAGGGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGc < 1:1097622/234‑1 (MQ=255) gaCTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 2:287455/238‑1 (MQ=255) agctttaacgtaaagtgtgaCAGTGGGGGGGAAAGGGGGGGGGAACGCATGGTCGGGCTGAAACTGGAATACGCAGGGAAAGGCGGCTGGAAGGCC‑AGCGCTACGCGGGAAGGCGGGCCGAACCTGAGCAACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTAAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 1:863303/219‑1 (MQ=255) aaTAAGAACAGGGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 2:447382/226‑1 (MQ=255) gTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGGAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGGTGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAACGGTCGGCGTGAAGTACAGCGGCAAAGAAAGt > 2:696030/1‑239 (MQ=255) gTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGGGGCATCAAAAACCTGACAAGGGTCGGCGGGAAGGAAAGCAGCAAAGAAAGt > 2:435969/1‑239 (MQ=255) tGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAAAAGCCTGACAAACGTCGGGGTGAAGGACCAGAGCAAAGAAAGt > 2:670789/1‑238 (MQ=255) ggCGAAACCGGGGGGGGCAGCATGCTGGGGCTGAAACTGGACTCCGCAGGGAAAGACGTGTGGAGGCAT‑AGCGCTACGCTGGAAGGCGGGGCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 1:1254202/238‑1 (MQ=255) gggAAACGGGGGGGGACAGGAGCGTCGGGGGGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGGGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 1:1128103/236‑1 (MQ=255) gCGAAACGGCGGTGGACAGCAGCGGCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 2:1264936/238‑1 (MQ=255) gggggTGGACAGGAGTGGCGGGGTGAAATGTGACTACGGAGGGAAAGGCGGCTGGGGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTgg < 1:172163/236‑1 (MQ=255) gggtggacctcggggggggtgtGAAACGGGACTCGGAAGGAAAAGACGGCTGGACGGCT‑AGCGCGAGGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGGGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTgg < 1:940123/216‑1 (MQ=255) ggTGGACAGCATCTTGGGGCTGAAAGTGGACTACGCCGGGAAAGACGGCTGGGGCACT‑AGGGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGAt < 1:736724/238‑1 (MQ=255) ggACAGCAGCGTCGGGCTGAAACTGGGCTGCGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCAATTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 2:1225643/238‑1 (MQ=255) ggACAGCAGCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 2:1138933/238‑1 (MQ=255) cgCATCGTTGGGGTGAAACGGGTCTGCGCAGGTAAAGGCGGCTGGAGTGCC‑AGCCACACGGTGGAAGGCGGGCCGAACCGGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACaa < 1:598289/238‑1 (MQ=255) cATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACa > 2:452482/1‑236 (MQ=255) aaagggacagAAACCGGACTACGCAGGTAAAGCCGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGa < 2:1118311/230‑1 (MQ=255) ggggggTTGAAACTGGACTACGCAGGGAAAAGCGGCGGGAGCGCG‑AGCGCTCCGCGGGAAGGCGGGCCGAACCTGAGCGACGCGGAGAGCCAGCGTACGGCAAGCCTGGGAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGaa < 1:696030/236‑1 (MQ=255) tcgGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCCCTGAATCTGGATGCGTACAACTGGaaa > 2:473072/1‑239 (MQ=255) aaCTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGc < 2:1018242/239‑1 (MQ=255) aaCGGGACCACGGAGGGAAAGGCGGCTGGAGCGCT‑AGCGGTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 1:719048/218‑1 (MQ=255) tGGACTTCGCAGGGAAAGACGGGTGGGGCGCT‑AGCGCTACGAGGGAAGGCGGGCCGAACCTGAGGTACGCGAAGAGCCAGGGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGGCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 1:939863/239‑1 (MQ=255) tGGACTCCGAAGGTAAGGCGGGCTGGGCGGCT‑GGCGCTGCGCTGGAAGGCGGGGCGAACCTGAGCCACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGGGCAGTCAGTCAGCACTTTAACGTCGATGGCGGTCAGAAGGGCGGCTGCATCAATAGCCTGACAAGCGGCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 1:473572/239‑1 (MQ=255) tGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 2:1285445/239‑1 (MQ=255) gACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGGACAGCAGCAACGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCa > 2:230922/1‑238 (MQ=255) cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGa > 2:719048/1‑218 (MQ=255) cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGAGGCGTACAACTGGAAAGAGGATGGCATCAGCGATa > 2:433615/1‑239 (MQ=255) cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGGGAAGTACAGCCGCAAGGAAAGTTCCCGGAATCTGGATGCGTACAACGGGAAAAAGGATGGcctgtctcttt > 1:1118311/1‑229 (MQ=255) cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAACCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGAGGGCATCAGCGATa > 2:348314/1‑239 (MQ=255) | CTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATA > NC_000913/1473520‑1473978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |