| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,796,589 | T→G | 6.8% | G204G (GGT→GGG) | waaC → | ADP‑heptose:LPS heptosyl transferase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,796,589 | 0 | T | G | 6.8% | 163.0 / 2.1 | 68 | G204G (GGT→GGG) | waaC | ADP‑heptose:LPS heptosyl transferase I |
| Reads supporting (aligned to +/- strand): ref base T (27/33); new base G (5/2); total (33/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCAC > NC_000913/3796364‑3796807 | tCGTAAGCATCATATTGCAAAACCGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTAGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACAATGGCCGGAAGAACCACGGCGGGGATTCATTGGttt > 1:110341/1‑228 (MQ=255)ccGTAAGCATCATATTGCAAAACAGCAGATCGCCGTAGAACGCGCGCACGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGGCCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTa < 1:635910/228‑1 (MQ=255) gTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTACCTACAGATGCTGGCGCATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGCGAATTGATTGGTTTACt > 1:519626/1‑229 (MQ=255) catATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGAGGATAAAAACCGGCCGGAAGAACACTGGGGGCAATTAAGTGGTTTAATGGGGGAtt > 2:682423/1‑229 (MQ=255) catATTGAAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGAtt < 1:682424/229‑1 (MQ=255) cAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCGGATTCCGGac > 1:698190/1‑227 (MQ=255) aaaacgtgagcaCGCCGTAAGACGTCACCGGGAAATGGTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCTTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATa < 1:492477/221‑1 (MQ=255) aaaaCAGCAGCACGCCGTAGAACGCACCCGGGAACTGGTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAAt < 1:247929/228‑1 (MQ=255) aaaCAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATa < 1:357090/228‑1 (MQ=255) cagcaCGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGCCCCGTGATGATAAACACTCGCCGGACTAACACTTGGGGGAATTGCTTGGGTTACTAGCTGATTCAGTAATaagaaata > 2:246727/1‑222 (MQ=255) cGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTATCTGGCCTATTCAGGAAAAC‑GGATTAAACtt > 1:325915/1‑229 (MQ=255) ccGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTc > 1:99273/1‑228 (MQ=255) tAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGTGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACGGGCTGATTCAGGAGTAC‑GGATTAAACTTCCGt > 1:159435/1‑228 (MQ=255) ccccccggAACTGGTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGgcgcg < 1:491263/222‑1 (MQ=255) ccccccgcaattttttGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGgcgcg < 2:99273/216‑1 (MQ=255) aCCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGCCGACCCGTGATGATAAACACTGGCCGGAAGAACACAGGGCAGAATGTATTGGTTTACTGGCTGATTCACGAACAC‑GGAATAAACATCCGTGGGgcgcgc > 2:743503/1‑229 (MQ=255) aCCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCAGGAAGAACACTGGCGGGATTTGTTTGGGTTACTGGATGATTCAGGAAAAC‑GGTTTAAACATACGTGGGgcgcgc > 2:313762/1‑229 (MQ=255) aCCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTAATGATAAACACTGGCCGGAAGAAAACTGTCGAGAATTGATTGGTTTACTGGCTGATTTAGGAAAAC‑GGTATAAAATTCCTGggggggggc > 2:491263/1‑224 (MQ=255) cccggcaacttgtttccAAAAGTTTTGGCTATACCAAACCGCAAAACCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGcgcc < 1:726817/214‑1 (MQ=255) ccGGGATCTTTTTTCCAAAAGTTTGGGTTTTAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGcgccg < 2:325915/229‑1 (MQ=255) ccGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGTCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGGTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTTCGTGGGGCGcgccc > 1:755660/1‑228 (MQ=255) tGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGGGAATTGATTGGTTTACTTGCTGATTCAGGAATAC‑CGCTTAAACTTCCGTGGGGCGCGCCGCATGAGgaagaa > 1:691446/1‑229 (MQ=255) taGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGCAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCCGGAATAA‑GGATTAAACTTCCGGTGGGCGCGCCGCATGAGGAGGAACGGGGGAACCGACTgggg > 1:703085/1‑227 (MQ=255) accgcaaaccCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCCGGGGGCGCGCCGCATGAGGAAGAACGGGCGCAACGACTGGCGGAAggc > 1:478214/1‑228 (MQ=255) accgcaaaccCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGGGATGCTAAACACAGGCCGGAAGAACACTGGCGAACATTGATTGGGTTCCTGGCTGATTCAGGAAAAC‑GGGTTAAAACTCCTTGGGGCGCGCCGAATGAGGAAGAAGGCGCGAAACGAACGGCGAAAGGa > 2:188885/1‑229 (MQ=255) aaaccCAGGGCGATTATGCATTTGCACAGCATTGTATGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGc < 1:188885/229‑1 (MQ=255) cgggCGATTTTGTTATCTCCCAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACCCTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACCGGCGAAACGCCTGGCGGAAGGATTTGCTTATGt < 2:358600/228‑1 (MQ=255) gggCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGCCCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGGTTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGAGCCCCCTGAGGAAGAACGGGCGAAACGACAGGCGGCAGGGTTTGCTTATGtt > 2:579489/1‑229 (MQ=255) gggCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTTAGGGATAA‑GAGTTAAACTTCCGTGGGGCGCGCCGCCTGCGGGAGAAAGGGCGAAAAGAACGGCGGGAgggattgttttggtt > 2:232103/1‑216 (MQ=255) aTTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGCTCGATTCAGGAAAAC‑GGATTAAACTTCCGTGGGGGCCGCCGCATGAGGAAGAACGGGGGAAACGAATGGGGGAAGGATTTGCTTATGTTGAGGt > 1:42767/1‑229 (MQ=255) tATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGCAACGACTGGCGGAAGGATTTGCTTATGTTTAAggaa > 1:291195/1‑226 (MQ=255) tCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGc > 2:361805/1‑127 (MQ=255) tCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGc < 1:361805/127‑1 (MQ=255) cGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGCTTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTCGGGCGGGCCGCATGAGGAAGAACGGGGGAAACGACTGGCGGACGGAGTTGGTTTGGTTGGAGAAATGCCGaaa > 2:255053/1‑228 (MQ=255) ccccacttttttCTG‑CGAACCTGCCTAGAAATGCGCGGGAATATGCCGTATTTCTTCATGCGACGGCCCGTGATGATAAACCCTGGCCGGAAGAACCCTGGCGAGAATTGAGTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGAt < 2:42767/221‑1 (MQ=255) tccaGCATTTTCGGAAGAACCTGCCTACAAGTTCGCGCGAAGATGCCGTATTTCTTCATGCGACGACCCGTGATGTTAAACCCTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGAt < 2:495953/227‑1 (MQ=255) caGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACCGGCGAGAATTGATTGGCTTACTGGCTGATTCAGGAATAC‑GGGTTAAACTTCCGTGGGGCGCGCCGCATTAGGAATAACGGGCGAAAAGACGTGCGGAAGGGGTGGGTTGTGTTGAAgaaatggcggaaaggg > 2:202857/1‑214 (MQ=255) gacgcgtccTAAAGGTGTTGGCGAATAGGCCGTTTTTCGTCATGCGACGACCCGGGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGt < 1:514093/221‑1 (MQ=255) cggCCTAAAGATGCTGGCGAATATGCCGTATGTCTTCATGCGACGACCCGTGAGGATAAACGCTGGCAGGAAGAACACTGGCGAGAATTGATTGGGTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGccc < 1:441865/227‑1 (MQ=255) ggCGAATATGCCGTATTTCTTCATGCGCCGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGCGTTGATTGGTTTACTGGCTGATACAGGAATAC‑GGATTAAACTTACTACGGGCGCGCCGCGTGAGGAAGAACGGCCGAAACGACTGTCGGAATGCATTGATTATGTTGGAGGATGGGCGGAGATGATAGTGGAAGGCGtgtcacccggacggggcgggg > 2:664230/1‑209 (MQ=255) gCGGATTTGCCGTATTTCTTCATGCGACGGCCAGGGATGATAAACAATGGCCGGAATAACACTGGCGAGAATGGATTGGTTTACTGGCTGATTCAGGAACAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGc < 1:750148/229‑1 (MQ=255) ggaTTGCTTCATGCGACGACCCGTGATGATAAACGCTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAGCTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTa < 1:202857/226‑1 (MQ=255) tttCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGCCTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGACGATGAGGCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTCAATTTTTAgggt > 1:35896/1‑229 (MQ=255) ttcttcATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTc < 1:46914/229‑1 (MQ=255) ttccctgcacggcCCGTGGTGATAAACACTGGCCGTAAGAACACCGGCGAGAATTGATTGGTTTACTGGCTGGTTCAGGAATCG‑TGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGt < 2:110341/221‑1 (MQ=255) tcAGGCGACGACCCGTGATTATAAACCCTGGCCGGAAGAACACTGGCGAGGATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCgg < 1:642938/227‑1 (MQ=255) tGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGGGTTGCCCTCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGAt > 1:585650/1‑229 (MQ=255) tGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAgtg < 2:205964/220‑1 (MQ=255) tGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAgtg > 1:205964/1‑220 (MQ=255) cgactaCCCGTGATGATAAACACTGGCCGGAAGAACGCTGGCGAGAATTGAGTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGGATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATAc < 1:653605/229‑1 (MQ=255) tgtatgatAATCACTGGCCGGAAGACCACTGGCGAGAATTGATTGGTTTGCTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAg < 1:316090/226‑1 (MQ=255) aaaCACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTTAAGGATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCCGGTGCTGGCCGGGGCGAAATTTGTATGGTAGGGGGATAAGGGGGTagaacaattaa > 2:117985/1‑219 (MQ=255) aaaCACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAAGGTCGGGGGGTACGGGGTTAAGCCATTTaa > 1:250686/1‑229 (MQ=255) actgtgCCGGAAAAACACTGGCGAGAAGGGAGTGGTTTACTGGCTGCTGCAGG‑ATACGGGATTAAACTTCCGGGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAATTATTGGCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTTTAGAGTCGGTGGATACGGGGTTAAGCCATTTAAcgg < 2:755659/224‑1 (MQ=255) ccTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAAcgg < 1:626704/227‑1 (MQ=255) ccTGGCCGGAAGAAAACGGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTGCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAAcgg < 1:60213/227‑1 (MQ=255) tGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGGTTTGCTTATGTTGAAGAATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGAGTGCTGGCCGGGGGTAAATTTGTAGGGTCGGTGGATAAGGGGTTTAGCCATTTAAaggcgg > 1:235583/1‑229 (MQ=255) gCCGGAAGAACCCTGGCTAGGATTGGTTGGTTTACTGGCTGATTCAGGAATCC‑GGATTAAACTTCCGTGGGGCGAGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCa < 1:313762/229‑1 (MQ=255) gCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGGGTTGTCCGCTGGCCGGCCGGGGCTAAATTTGTAGTGTCGGTGGTGAAGGGGGTAAGGCATTTAACgggggc > 1:744795/1‑228 (MQ=255) gCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCTCGTGCGGGCCGGGGCTAACTTTGTAGTGTCGTGGGAGTCGGGGGTAAGCCCTTTAACggcggcg > 1:345438/1‑228 (MQ=255) aagaaCATTGGGGAGAATTGATTGGTTTACGGGCTGATTCAGGAAGAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGa < 2:291195/229‑1 (MQ=255) agaaCCCTGGGGAGAATTGATTGTTTTACTGGCTGATTCAGGAATCC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGAt < 2:703084/229‑1 (MQ=255) gCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAAcgg > 1:690520/1‑209 (MQ=255) gCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAAcgg < 2:690519/209‑1 (MQ=255) agaATTGATTGGGTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGAGGGGTCTGGAAGGCGTTGCCCCCGGGTTGGCCGGGGCCAAATTTGTGAGGTAGTGGGATTCGGGGGTACGCCCTTTATCGGCGGGACTgagaagagacaaaaaa > 2:313537/1‑214 (MQ=255) gtattgattgTGTTGCTGGGGGTTTCAGGAATAC‑GGAATAACCTTTCGTGGGGCGCGCCGAATGATTAAGAACGGGCGAAACGTATGGCGGAAGGATTTGCATATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCa < 2:29139/227‑1 (MQ=255) gattgattgGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCACATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCAc < 1:172329/228‑1 (MQ=255) atttgtttgGTTTACTGGCGAATTCAGGAATAC‑GGATTAAACTTCCGGGGGGCGCGCCGAATGAGGAAGAACGGGAGAAACGGCTGGCGGAAGGATTTGCTTATGTTGAAGTATGGCCGAAGATGAGGCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCAc < 2:519626/227‑1 (MQ=255) attgGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAAcgg < 1:575908/199‑1 (MQ=255) | TCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATAC‑GGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCAC > NC_000913/3796364‑3796807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |