| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,857,244 | T→C | 7.8% | D387G (GAT→GGT) | yidJ ← | sulfatase/phosphatase superfamily protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,857,244 | 0 | T | C | 7.8% | 197.9 / 2.4 | 72 | D387G (GAT→GGT) | yidJ | sulfatase/phosphatase superfamily protein |
| Reads supporting (aligned to +/- strand): ref base T (46/19); new base C (3/4); total (49/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCCATCCAGCGCGGCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGA > NC_000913/3857018‑3857472 | ccccATCCAGCGGGGCCGTGCATCTTTGCGCCACGGACGCAGACTCCAGTGGTAACGGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTTCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATc < 1:540212/228‑1 (MQ=255) tCCAGCGCGGCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGCTCAGGTTATGCATTTCATTTGGTTCATTACGCCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGGGTCCCAGTTTAAAGTCACCCTTcc > 2:712967/1‑227 (MQ=255) tCCAGCGCGGCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTTGTAACCAGTTTAAAGTCATCCGTccc > 1:740362/1‑227 (MQ=255) cgcgGCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCCGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATACCTGGAGAAGAGGTTGAGTACCAGTTTTAAGTCATCCGTCACCCAGc > 1:725839/1‑229 (MQ=255) gCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACg < 1:7666/229‑1 (MQ=255) ccGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTACTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACCGCGATCGTAAAGTTACTCACTGGTGACGAGGTTGAGTACCAGTTTAAAGTCATCCGTCCCCAAGCAAcca > 2:510630/1‑227 (MQ=255) gtgcccgtttactcacaggACGCAGGCTCCGATGGTAACTGCCGATCGGTTCGCCGATTTTTTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTTCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGATGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCTACGCAc < 1:757034/212‑1 (MQ=255) cgtcgtCTTTACGCCACTGACGCAGACTCCATTGGTAACTGCGGATCGGATCGAGAATTTTGTCCATGTAATCCAATAAGGGGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGcgc < 1:740624/224‑3 (MQ=255) cGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATaa > 1:113635/1‑226 (MQ=255) cGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTTAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGcc > 1:166194/1‑228 (MQ=255) cGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACAGCCa > 1:372949/1‑229 (MQ=255) gactcccttgtgaacgcgggAACGGATCGCAGATTTTGTCCATGTAAGCAAAAAAGGGGCAAGGCTTTTTGGTGCAAACGTTGACAAACCGGATATCAGCGATCAGGTTATGCATTTAATTGGGGTCATTACGGCGATCGTAAATTTCATCCCTGGTGAAGAGGTTGAGTACCAGTTAAAAGTCATCCGTCCCCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTc < 2:199349/211‑1 (MQ=255) aCTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTAACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCg > 1:545812/1‑229 (MQ=255) tggggAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCGGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTa < 1:236376/226‑1 (MQ=255) tGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGGCCAATCTCGt > 1:686873/1‑228 (MQ=255) cGGAACGGATCGCGATTTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTCAAGTTCATCACTGGTGAAGAGGGTGAGTACCAGTTTAAAGTCATCCGACACCCAGCAACGCACCGGAATAAAACGGCCAAAGCTGTCATGCTcctgtctctttt > 1:108024/1‑218 (MQ=255) cGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTCAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACAGCCAAAGCTGTCATGCTCAATCTCGTAg > 1:583198/1‑228 (MQ=255) cGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAg > 1:518291/1‑228 (MQ=255) aaCGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCATTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCAACCAGCAACGCACCGGAATAAAACCGCCGAAGCTGTCATGCTCAATCCCGTAGCgg > 1:223493/1‑228 (MQ=255) aTCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGGAAAGTTCATCACTGGTGAAGAGGTTGAGACCCAGTTTAAAGTAATCCGTCACCCAGCAACGCACCGAACTAAAAACGCCAAAGCTGCCACGCTCAACCTCCAAACGGTTaaa > 2:270357/1‑228 (MQ=255) aTCGCGAATTTTGTCCATGTAATCCAATAAGGCGGCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAACCTGTAAACATCAATCTCGTAGCGGTTaaa > 1:635723/1‑228 (MQ=255) tCCAATAAGGCGTCCTGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGCGGTTGAGGACCAGTTTAAAACCATCAGTCACCCAGAAATGCACCGGGATAAAACCGCCAAAGTTGCCAGGCTCAATCTCGCAGAGGTTAAATTACCCCACCAccccgcagggcc > 2:554686/1‑223 (MQ=255) tAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCGTTc > 1:272644/1‑229 (MQ=255) tAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCAACCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCCCAATCTCGTACCGGTTAAATTCCACCATCACGCCCCGTGGCTATTTc > 1:205474/1‑229 (MQ=255) gcgaaTGCTTTTTGCTGCGAACGTCTGAAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTAATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCCCCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGc < 1:538403/225‑1 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTTAAGTCACCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGATGGCATGCTCAATCTCCGAGCGGTTAAATTCCACCATCACGCCGCGTGGCCCTTTCACGGc > 2:538403/1‑229 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCCCCATCACGCCACGAGGCCCTTTCACGGc > 1:725925/1‑229 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTGAAATTCCACCATCACGCCCCGTGGCTCTTTCACgca > 1:56585/1‑227 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATCCTCAATCTCGTAGCGGTTAAATTCCACCATAACCCCCCGTGGCCCTTTccaggc > 1:644890/1‑224 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCACCCGTCACCCAGCAACGCAACGGAAAAAAACCGCCAAAGCTGTCATGCTCAACTTCGAGCCGGTTAAATTCACACAACACCCCGCTGGGCCCTTTCCCgga > 2:538389/1‑228 (MQ=255) cGTCATGCATTTTGCTGCGAACGTCTGAAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCACCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGc < 1:538389/229‑1 (MQ=255) ctCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCCCCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCa < 1:535252/228‑1 (MQ=255) ttttgatttttGCTGCAAACGGCTGAAAAAGGGAATTCATCGATTGGTTTATGCCTTTAATTTGGGTTCTTACGGCGATCGTAAAGTTCATCACGGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCCCCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCaa < 2:725838/222‑1 (MQ=255) tCATGCATTTTGCTGCGAACGTCTGTAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCCCGTGGCCCTTTCACGGCa > 1:500070/1‑228 (MQ=255) tCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATGACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAACCATCCGTCCCCCAGCAACGCACCGGAATAAAACCGCCAAAACTGCTATGCTCAAACTCGTAGCGGTTAAATTCCACCAACAACCCCCAGGGCCGTTTAACGGCaa > 2:328216/1‑229 (MQ=255) tttGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATAttt > 1:483651/1‑229 (MQ=255) tGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTACAGTTCATCACTGGTGAAGCGGTTGAGTCCCAGTTTAACGTCATCCGTCACCCAGCAACGCCCCGGAATAAAACCGCCAAAGCTGTCCTGCTCAATCTCTCAGCGTGTCAATTCCACCATCACTCCGCCCGACCCTTTCACGGCAAGGATATTTTCCCCCGGccggat > 1:603924/1‑223 (MQ=255) tGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGAAATTTTTCCCCGGCACAAtc > 1:672150/1‑229 (MQ=255) aaaaaCGGATTTCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAAtctc < 1:14867/228‑1 (MQ=255) atatCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGttttt > 1:127181/1‑229 (MQ=255) cGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAACGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCaa > 2:40974/1‑189 (MQ=255) cGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCaa < 1:40974/189‑1 (MQ=255) aTGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGATGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCCTCACGCCGCCTGGCTCTTTCACGGTAAGGAGATTTTCCCCCAGCAGACTCTCTGGCTTTTCAATATCTGCCAgccca > 2:219370/1‑226 (MQ=255) aTGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCCCCATCACGCCGCGTGGCTCTTTCACGGc > 2:66804/1‑177 (MQ=255) aTGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGc < 1:66804/177‑1 (MQ=255) catttcatttGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCCCGGCAAGGGTATTTTCCCCCGGCAGAATCTCTGGTTTTTCAAAATCTCCCAGCGCcctc > 1:524793/1‑229 (MQ=255) tcatttGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGTTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGGTAAATTCCACCATCACGCCGCGTGGCCCTTTCACGCCAAGGATGTTTTCCCCCGTCACAAACACTGGTTTTTCAATATCTGcaacggcctgcattt > 1:313833/1‑215 (MQ=255) tcatttGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCAttt > 1:162072/1‑228 (MQ=255) tcatttGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGGGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAAAAATCCTGGTTTTTCAATATCTGCCATAGCCATCATTg > 2:549333/1‑229 (MQ=255) ttGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCCCGCCCCGTGGCTCTTTCCCGGCAAGGATATTTTCCCCCCGCAGACATTCTGGTTTTTCAATATCTGcccagcccatcactttcc > 2:8732/1‑212 (MQ=255) ggTCATTACGGCAAGCGTAAAGTTCCTCACTGGTGAAGAGGTTGAATACCAGTTTAAAGTCATCCGTCCCCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCa < 1:510630/228‑1 (MQ=255) cATTTCGGCAATCGTAAAGTTCCTCCCTGGAGAAGAGGTTGAGTACCAGTTTAAAGTCACCCGTCCCCCAGCAACGCCCCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTaa < 2:272644/229‑1 (MQ=255) cGATCGTAAAGTTAAGCCCTGGTGAATAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACCGACCGGAATAAAACCGCCAAAGCTGGCATGCTCAATTTAGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGata < 1:270357/228‑1 (MQ=255) cGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCCAGGATATTTTCTCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGTTAtgact > 1:215579/1‑229 (MQ=255) cGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCCAGGATATTTTCCCCCGGCAGAGTCTCTGGTTTTTCAATCTCTGCCAGCGCCATCATTGTCGGCAGTAAATCGCTAtgac > 1:112097/1‑228 (MQ=255) attcctccctgggTGAAGAGGTTGAGAACAAGTTTAAAGTCATCCGTCTCCCAGCACCGCCCGGGAATAAAACCGCCAAAGCTGTCCTGCTCAATCTCGTAGCGGTTAAATTCCCCCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGactgactg < 2:518291/218‑1 (MQ=255) atcaCTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCCGGATCTCTGGTTTTTCAATATCGTCAAGCGCACCCATTTTCGCGAGTAAAACGATAttactacacggccta > 2:597442/1‑219 (MQ=255) cctcgtgggAAGGGGTGGAATCCCAGTTGAAAGCCATCCTTCACACAGCAACGCCCAGAAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTAt < 2:740361/221‑1 (MQ=255) tGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTCTCGGCAGTAAATCGATATGACTGACTGGCGTATCGa > 1:287871/1‑228 (MQ=255) gTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGAcc > 1:259088/1‑228 (MQ=255) aaGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACTGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATACCGCCGCGAGGCTCTTTCAAGGCAAGGATATTTTACCCCGGCCATATCTCTTGCTTTTCAATATATGCCAAGCCCATCTATGTCGGCAGTAAAACTAAATGACTAACTGGCGTATcacactgtc > 2:605753/1‑221 (MQ=255) aaGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTTTCGGCAGTAAATCGATATGACTTACTGGCGTATCGACCTg > 1:587411/1‑227 (MQ=255) ggggTTGAGATCCGGTTTAAAGGTCTCCGTCCACCAGCAACGCACCGGAATAAACCCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCGCCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTcgc < 1:554687/227‑1 (MQ=255) gagGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCATCCAGAGCCACCATTTACGGCAGTAAATCGATATGATGGACTGTGGTACCGACCGTTcgc > 1:434789/1‑229 (MQ=255) tGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGCCAGTAAATCGATATGACTGACTGGCGGCTCGACCTGTCGCCtctc > 1:422170/1‑229 (MQ=255) gAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCGGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACCGGCGTATCGCCCTTTCGCCCCTcc > 1:602050/1‑229 (MQ=255) aGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTCTCGGCAGTAAATCGATATGACTGTCTTGGGAATCGACCTATCGCCGCTCCACTTgcg > 1:753836/1‑229 (MQ=255) gTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGGGTATCGACCTGTCGCCGCTCCCCttcggg > 1:474051/1‑225 (MQ=255) ttAAAGTCACCCGTCCCCCAGCACAGCCCCGGAATAAAACCGCCAAAGCTGTCATTGTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTgcggcg < 2:644889/229‑1 (MQ=255) aaGTCCTCCGTCACCCAGCACCGCCCCGGAATAAACCCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAAc < 1:231382/229‑1 (MQ=255) aaGTCATACGTCCCCGAGCAACGAACCAGAATAAAACCGCCAAAACTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGaa < 1:712968/228‑1 (MQ=255) gccATCCTTCCCCCACCAGGGCGCGGGAATAAAACCGCGAAAGCGGTCATGCTCAACCCCGTAGCGGTTAAATTCCACCAGCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACgg < 2:125440/227‑1 (MQ=255) tCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCCTTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGgatgc > 1:142286/1‑228 (MQ=255) | CCCCATCCAGCGCGGCCGTGCATCTTTACGCCACGGACGCAGACTCCATTGGTAACTGCGGAACGGATCGCGAATTTTGTCCATGTAATCCAATAAGGCGTCATGCATTTTGCTGCGAACGTCTGCAAAACGGATATCATCGATCAGGTTATGCATTTCATTTGGGTCATTACGGCGATCGTAAAGTTCATCACTGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGA > NC_000913/3857018‑3857472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |