New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2562179 =115 (0.710)3 (0.020) 3/496 NT 2.5% coding (71/417 nt) yffO CPZ‑55 prophage, uncharacterized protein
?NC_000913 2562377 = 127 (0.810)coding (269/417 nt) yffO CPZ‑55 prophage, uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2562477‑2562179
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggccgacGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAGTTTGTCT  >  NC_000913/2562377‑2562663
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTCGCCAGCGCATCATCTGACGGTGGCTCGGCATCGCTGGACTCATGCTGATCTTGCGCAAACTATAAACTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCCTTATATTTA                                                                                                                                                                                                                                                                                                           >  2:27835/1‑289
  CTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTA                                                                                                                                                                                                                                                                                                           >  1:685210/1‑287
                                                                                                                        CCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAAT                                                                                                                                                                                   >  1:1437054/1‑289
                                                                                                                                                         GAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAA                                                                                                                                                  >  1:212546/1‑289
                                                                                                                                                                                                     TCGGCATCCCCGTCATCATGCTGTTCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGC                                                                                                       <  2:1437054/288‑1
                                                                                                                                                                                                                                                                                                   TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:190561/288‑1
                                                                                                                                                                                                                                                                                                   TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:704505/288‑1
                                                                                                                                                                                                                                                                                                   TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:932312/288‑1
                                                                                                                                                                                                                                                                                                   TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  2:1078193/288‑1
                                                                                                                                                                                                                                                                                                         ACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTG                                                                                                  <  1:785362/193‑1
                                                                                                                                                                                                                                                                                                         ACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGAAGCTG                                                                                                  >  2:785362/1‑193
                                                                                                                                                                                                                                                                                                          CGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACCTTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGACATCAGGCGTTTTAATCTGATAGCAGCGCTTCTTGCGTTTGGCT  >  2:7097/1‑288
                                                                                                                                                                                                                                                                                                          CGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATGTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGG                                                       <  1:979321/235‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2562477‑2562179
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggccgacGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAGTTTGTCT  >  NC_000913/2562377‑2562663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.