New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2562179 =	115 (0.710)	3 (0.020)	3/496	NT	2.5%	coding (71/417 nt)	yffO	CPZ‑55 prophage, uncharacterized protein
	?	NC_000913	2562377 =	127 (0.810)					coding (269/417 nt)	yffO	CPZ‑55 prophage, uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2562477‑2562179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggccgacGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAGTTTGTCT  >  NC_000913/2562377‑2562663                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTCGCCAGCGCATCATCTGACGGTGGCTCGGCATCGCTGGACTCATGCTGATCTTGCGCAAACTATAAACTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCCTTATATTTA                                                                                                                                                                                                                                                                                                           >  2:27835/1‑289   CTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTA                                                                                                                                                                                                                                                                                                           >  1:685210/1‑287                                                                                                                         CCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAAT                                                                                                                                                                                   >  1:1437054/1‑289                                                                                                                                                          GAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAA                                                                                                                                                  >  1:212546/1‑289                                                                                                                                                                                                      TCGGCATCCCCGTCATCATGCTGTTCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGC                                                                                                       <  2:1437054/288‑1                                                                                                                                                                                                                                                                                                    TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:190561/288‑1                                                                                                                                                                                                                                                                                                    TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:704505/288‑1                                                                                                                                                                                                                                                                                                    TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  1:932312/288‑1                                                                                                                                                                                                                                                                                                    TGGCCGACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAG         <  2:1078193/288‑1                                                                                                                                                                                                                                                                                                          ACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTG                                                                                                  <  1:785362/193‑1                                                                                                                                                                                                                                                                                                          ACGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGAAGCTG                                                                                                  >  2:785362/1‑193                                                                                                                                                                                                                                                                                                           CGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACCTTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGACATCAGGCGTTTTAATCTGATAGCAGCGCTTCTTGCGTTTGGCT  >  2:7097/1‑288                                                                                                                                                                                                                                                                                                           CGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATGTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGG                                                       <  1:979321/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTGCTGCCAGTAGTGCCTTTGCCTTTGCTTCTGCTTTGCGCAACTGCTTCGGCCCATCCTCTGCGTTTATATCAACCTCGTCGATTATCTCGACGGCACGTCGGCCAGCTTCAGCGCACCATAGCCACGACATCCAGGCTATCCCTTCCCTGAAGTCCATATGCTCCAGTTGCCAGCGCATCATCTGACGGTGGCTCGGCATCCCTGGCATCATGCTGATCTTGCGCAAACTATAACCTTCGCTTACCAATAGGACGATTTGCGTTGCTATTTTTTCATTATATTTAGCTGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2562477‑2562179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggccgacGTGCCGTCGAGATAATCGACGAGGTTGATATAAACGCAGAGGATGGGCCGAAGCAGTTGCGCAAAGCAGAAGCAAAGGCAAAGGCACTACTGGCAGCAGCCAAGCTGAATAGTTTGAAACATTCACCATTTGGAGATGACAAACAATGAGCCTGATCCGCACTGAAACCAGAGACACAAAACGCGCAGCTGACCCACTGCACGACCTGCGTAGCAAGCCGTTTTCTGAGTGGGGCGAAGATGAAATCAGGCGTTTTAATCTGATAGACGCGCTTCTTGAGTTTGTCT  >  NC_000913/2562377‑2562663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.