New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3233221 =127 (0.780)3 (0.020) 3/500 NT 2.4% coding (1559/2019 nt) fadH 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
?NC_000913 3233291 = 126 (0.800)coding (1629/2019 nt) fadH 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
Rejected: Frequency below/above cutoff threshold.

TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3233513‑3233221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggtggCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTGAT  >  NC_000913/3233291‑3233575
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCGCGTCATCGTCAATCTTATGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGATTTGCCTAACCACTGACCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGAGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTAGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTG                                                                                                                                                                                                                                                                                                   >  1:747481/1‑289
 GCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGG                                                                                                                                                                                                                                                                                                  >  2:213715/1‑289
     ATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACACGGCGATATTCTGGCCGGTGta                                                                                                                                                                                                                                                                                              >  2:609107/1‑287
          TGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCCATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGACCCCCCATTCATTACAGAACCCGGCGATCTTCTGGCTGGTGGCTTcg                                                                                                                                                                                                                                                                                          >  1:247182/1‑286
                                                                                                                                                                           CATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCGCCCATTCATTACAGAACCCGGCGATATTCTGGATGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCACACGGCAGATTGTGATGCCCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGGAAAACAACCGGCTGGATCCATGCAACCACACTGCCCACGCGGGGGGTAAAAATGAACCCAGGCGTACGTCATCAGA                                                                                                                        >  2:261230/1‑289
                                                                                                                                                                                                    GGGATCTGCATTCCTGGCGGGCTTAAGCCACCGGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGTTATTCTGGCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATG                                                                                                <  1:261230/288‑1
                                                                                                                                                                                                                                                    CTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCCGGCGTAAGTTATCAGAAGATTGAAGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTACTAGCAGTGGACAATGTGGTGg                                                >  2:561683/1‑287
                                                                                                                                                                                                                                                                                 tgcctgcaaccaGCTGGTGGCTGAAGCCCGCAGGGAATGCAGATCCCCCAGAGACAACGGCGGTTTGTGATGCTCCATCGCAAAGCCAGCAAACCAGGGCAGGGGTTAGGCAAAACCAGCGGCTGGATCCATCGTACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCG                   <  2:351774/276‑1
                                                                                                                                                                                                                                                                                             GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAAGGGCGAAACGCAGGTATTAGCAGTGGACCATGTGGTGATCTGCGGAGGGCAAGCGCCAAACCcgtctcttaaacaca         >  2:352477/1‑271
                                                                                                                                                                                                                                                                                             GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCG       >  1:124670/1‑288
                                                                                                                                                                                                                                                                                             GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACC        >  1:1108619/1‑287
                                                                                                                                                                                                                                                                                              CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCG       <  1:893617/287‑1
                                                                                                                                                                                                                                                                                              CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACC        >  1:778115/1‑286
                                                                                                                                                                                                                                                                                              CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAAC         <  2:742778/285‑1
                                                                                                                                                                                                                                                                                               TGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTCAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTG    >  1:770842/1‑289
                                                                                                                                                                                                                                                                                                 GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGGGATCTGCGCAGGGCAAGAGCCCAACCGCCCGCCGGCGCAAGCGCGGAT  >  2:1308678/1‑289
                                                                                                                                                                                                                                                                                                 GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCAACCTGCTCTCGCGGGGTGTGAAAATGATCCAAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGGGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCGGAT  >  1:461862/1‑289
                                                                                                                                                                                                                                                                                                 GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAG                                                                                                                                                                                                                          >  1:766654/1‑73
                                                                                                                                                                                                                                                                                                 GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAG                                                                                                                                                                                                                          <  2:766654/73‑1
                                                                                                                                                                                                                                                                                                  TGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCA                                                                                                                                                                        <  2:460420/122‑1
                                                                                                                                                                                                                                                                                                  TGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCA                                                                                                                                                                        >  1:460420/1‑122
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3233513‑3233221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggtggCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTGAT  >  NC_000913/3233291‑3233575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.