New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3233221 =	127 (0.780)	3 (0.020)	3/500	NT	2.4%	coding (1559/2019 nt)	fadH	2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
	?	NC_000913	3233291 =	126 (0.800)					coding (1629/2019 nt)	fadH	2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
Rejected: Frequency below/above cutoff threshold.

TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3233513‑3233221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggtggCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTGAT  >  NC_000913/3233291‑3233575                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCGCGTCATCGTCAATCTTATGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGATTTGCCTAACCACTGACCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGAGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTAGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTG                                                                                                                                                                                                                                                                                                   >  1:747481/1‑289  GCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGG                                                                                                                                                                                                                                                                                                  >  2:213715/1‑289      ATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACACGGCGATATTCTGGCCGGTGta                                                                                                                                                                                                                                                                                              >  2:609107/1‑287           TGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCCATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGACCCCCCATTCATTACAGAACCCGGCGATCTTCTGGCTGGTGGCTTcg                                                                                                                                                                                                                                                                                          >  1:247182/1‑286                                                                                                                                                                            CATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCGCCCATTCATTACAGAACCCGGCGATATTCTGGATGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCACACGGCAGATTGTGATGCCCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGGAAAACAACCGGCTGGATCCATGCAACCACACTGCCCACGCGGGGGGTAAAAATGAACCCAGGCGTACGTCATCAGA                                                                                                                        >  2:261230/1‑289                                                                                                                                                                                                     GGGATCTGCATTCCTGGCGGGCTTAAGCCACCGGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGTTATTCTGGCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATG                                                                                                <  1:261230/288‑1                                                                                                                                                                                                                                                     CTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCCGGCGTAAGTTATCAGAAGATTGAAGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTACTAGCAGTGGACAATGTGGTGg                                                >  2:561683/1‑287                                                                                                                                                                                                                                                                                  tgcctgcaaccaGCTGGTGGCTGAAGCCCGCAGGGAATGCAGATCCCCCAGAGACAACGGCGGTTTGTGATGCTCCATCGCAAAGCCAGCAAACCAGGGCAGGGGTTAGGCAAAACCAGCGGCTGGATCCATCGTACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCG                   <  2:351774/276‑1                                                                                                                                                                                                                                                                                              GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAAGGGCGAAACGCAGGTATTAGCAGTGGACCATGTGGTGATCTGCGGAGGGCAAGCGCCAAACCcgtctcttaaacaca         >  2:352477/1‑271                                                                                                                                                                                                                                                                                              GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCG       >  1:124670/1‑288                                                                                                                                                                                                                                                                                              GCTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACC        >  1:1108619/1‑287                                                                                                                                                                                                                                                                                               CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCG       <  1:893617/287‑1                                                                                                                                                                                                                                                                                               CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACC        >  1:778115/1‑286                                                                                                                                                                                                                                                                                               CTGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAAC         <  2:742778/285‑1                                                                                                                                                                                                                                                                                                TGGTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTCAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTG    >  1:770842/1‑289                                                                                                                                                                                                                                                                                                  GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGGGATCTGCGCAGGGCAAGAGCCCAACCGCCCGCCGGCGCAAGCGCGGAT  >  2:1308678/1‑289                                                                                                                                                                                                                                                                                                  GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCAACCTGCTCTCGCGGGGTGTGAAAATGATCCAAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGGGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCGGAT  >  1:461862/1‑289                                                                                                                                                                                                                                                                                                  GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAG                                                                                                                                                                                                                          >  1:766654/1‑73                                                                                                                                                                                                                                                                                                  GTGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAG                                                                                                                                                                                                                          <  2:766654/73‑1                                                                                                                                                                                                                                                                                                   TGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCA                                                                                                                                                                        <  2:460420/122‑1                                                                                                                                                                                                                                                                                                   TGGCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCA                                                                                                                                                                        >  1:460420/1‑122                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCTAATACCTGCGTTTCGCCGTTGATCACCACATGCAGCCCGTCATCGTCAATCTTCTGATAACTTACGCCTGGGATCATTTTCACACCCCGCGAGAGCAGGGTGGTGCGATGGATCCAGCCGGTGGTTTTGCCTAACCCCTGTCCTGGTTTGCTGGCTTTGCGCTGGAGCATCACAATCTGCCGTGGGCTACGGGGGATCTGCATTCCCTGCGGGCTTAAGCCACCAGCCTGTTGTAGGCTACTGTCGATCCCCCATTCATTACAGAACCCGGCGATATTCTGGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3233513‑3233221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggtggCTTAAGCCCGCAGGGAATGCAGATCCCCCGTAGCCCACGGCAGATTGTGATGCTCCAGCGCAAAGCCAGCAAACCAGGACAGGGGTTAGGCAAAACCACCGGCTGGATCCATCGCACCACCCTGCTCTCGCGGGGTGTGAAAATGATCCCAGGCGTAAGTTATCAGAAGATTGACGATGACGGGCTGCATGTGGTGATCAACGGCGAAACGCAGGTATTAGCAGTGGACAATGTGGTGATCTGCGCAGGGCAAGAGCCAAACCGCGCGCTGGCGCAACCGCTGAT  >  NC_000913/3233291‑3233575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.