New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1147651	144 (0.970)	4 (0.030)	4/488	NT	2.8%	coding (31/1071 nt)	plsX	putative phosphate acyltransferase
	?	NC_000913	= 1147675	135 (0.930)					coding (55/1071 nt)	plsX	putative phosphate acyltransferase

TAAGGTCCATGGCCGTACAACAGAATAAACCAACCCGTTCCAAACGTGGCATGCGTCGTTCCCATGACGCGCTGACCGCAGTCACCAGCCTGTCTGTAGACAAAACTTCTGGTGAAAAACACCTGCGTCACCACATCACTGCCGACGGTTACTACCGCGGCCGCAAGGTCATCGCTAAGTAATCACGCATCTGCGTGATGAAGCTTAGTGAGGATTTTCCCCAGGCAACTGGGGAAAGACCAAACCGGGCGGCGACGATACCTTGACACGTCTAACCCTGGCGTTAGATGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1147359‑1147651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcaCGGAAGGGCCAAAATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACGCAGATGCGTGATTACTTAGCGATGACCTTGCGGCCGCGGTAGTAACCGTCGGCAGTGATGTGGTGACGCAGGTGTTTTTCACCAGAAGTTTTGTCTACAGACAGGCTGGTGACTGCGGTCAGCGCGTCATGGGAACGACGCATGCCACGTTTGGAACGGG  <  NC_000913/1147675‑1147392                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAAGGTCCATGGCCGTACAACAGAATAAACCAACCCGTTCCAAACGTGGCATGCGTCGTTCCCATGACGCGCTGACCGCAGTCACCAGCCTGTCTGTAGACAAAACTTCTGGTGAAAAACACCTGCGTCACCACATCACTGCCGACGGTTACTACCGCGGCCGCAAGGTCATCGCTAAGTAATCACGCATCTGCGTGATGAAGCTTAGTGAGGATTTTCCCCAGGCAACTGGGGAAAGACCAAACCGGGCGGCGACGATACCTTGACACGTCTAACCCTGGCGTTAGAT                                                                                                                                                                                                                                                                                                  >  2:630509/1‑289                                                                                                                                                                                                                                                                             gcctccaatgctgacagcactttaACGGAACGGCCCAGATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGGGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCGGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACGCGGATGCGTGATTACTTAGCGATGACCTTGCGGCCGCGGTAGTAACCGTCGGAAGTGATGTGGTGACGCAGGTGTTTTTCACCAGAAGTTTTGTCTACAGACAGGCTGGTGACTGCGGTCAGCGCGTCATGGGAACGA                        <  1:1192229/263‑1                                                                                                                                                                                                                                                                                  caatgcggcgggaagTGTCACGGAAGGGCCAAAATCCCCCCACATGACTTGTGACGCCAGGTGTAGGCGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCCCTAAGCTTCATCACGCAGATGCGTGATTACTTAGCGATGACCTTGCGGCCGCGGGAGTAACCGTCGGCAGTGATGTGGTGACGCAGGTGTTTTTCACCAGAAGTTTTGTCTACAGACAGGCTGGTGACTGCGGTCAGCGCGTCATGGGAACGACGCATGC                 <  1:915547/274‑1                                                                                                                                                                                                                                                                                   ACCCTGGCGTTAGATGTCATGGGAGGGGATTTTGGCCCTTCCGTGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACT                                                                                                                                                                               >  1:416198/1‑130                                                                                                                                                                                                                                                                                   ACCCTGGCGTTAGATGTCATGGGAGGGGATTTTGGCCCTTCCGTGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACT                                                                                                                                                                               <  2:416198/130‑1                                                                                                                                                                                                                                                                                    CCCTGGCGTTAGATGTCACGGAAGGGCCAAAATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACG                                                                                                                                                                  >  1:546676/1‑142                                                                                                                                                                                                                                                                                    CCCTGGCGTTAGATGTCACGGAAGGGCCAAAATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACG                                                                                                                                                                  <  2:546676/142‑1                                                                                                                                                                                                                                                                                                 TGTCACGGAAGGGCCAAAATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACGCAGATGCGTGATTACTTAGCGATGACCTTGCGGCCGCGGTAGTAACCGTCGGCAGTGATGTGGTGACGCAGGTGTTTTTCACCAGAAGTTTTGTCTACAGACAGGCTGGTGACTGCGGTCAGCGCGTCATGGGAACGACGCATGCCACGTTTGGAACGGG  <  1:1226698/289‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAAGGTCCATGGCCGTACAACAGAATAAACCAACCCGTTCCAAACGTGGCATGCGTCGTTCCCATGACGCGCTGACCGCAGTCACCAGCCTGTCTGTAGACAAAACTTCTGGTGAAAAACACCTGCGTCACCACATCACTGCCGACGGTTACTACCGCGGCCGCAAGGTCATCGCTAAGTAATCACGCATCTGCGTGATGAAGCTTAGTGAGGATTTTCCCCAGGCAACTGGGGAAAGACCAAACCGGGCGGCGACGATACCTTGACACGTCTAACCCTGGCGTTAGATGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1147359‑1147651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcaCGGAAGGGCCAAAATCCCCTCCCATGACATCTAACGCCAGGGTTAGACGTGTCAAGGTATCGTCGCCGCCCGGTTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTCATCACGCAGATGCGTGATTACTTAGCGATGACCTTGCGGCCGCGGTAGTAACCGTCGGCAGTGATGTGGTGACGCAGGTGTTTTTCACCAGAAGTTTTGTCTACAGACAGGCTGGTGACTGCGGTCAGCGCGTCATGGGAACGACGCATGCCACGTTTGGAACGGG  <  NC_000913/1147675‑1147392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.