Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	2,023,805	(CTTTA)2→1	14.5%	intergenic (+127/‑159)	fliR → / → rcsA	flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2023801 =	127 (0.850)	20 (0.140)	20/480	NT	14.5%	intergenic (+123/‑167)	fliR/rcsA	flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis
	?	NC_000913	= 2023795	113 (0.790)					intergenic (+117/‑173)	fliR/rcsA	flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

ACAAGCTATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2024096‑2023801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  NC_000913/2023795‑2023512                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAAGCTATGTCAATGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCTGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCCTTTACATGGCATACCCTCACTCAATGCTTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCATTCTCGCGATTTTTCAGGCTGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTA                                                                                                                                                                                                                                                                                                     <  2:829628/289‑1       TATTGCAAGGTCATCAACCGTTTCAATGTCGTTTAATTCTCTTTTTTTAACCCCTCTACTCCACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTGGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAA                                                                                                                                                                                                                                                                                               <  1:674603/289‑1       TATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGT                                                                                                                                                                                                                                                                                                 <  2:723527/287‑1       TATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGT                                                                                                                                                                                                                                                                                                 <  2:880124/287‑1                                                                      CAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGT                                                                                                                                                                                                                                >  2:446266/1‑289                                                                           ACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTA                                                                                                                                                                                                                           >  2:86906/1‑289                                                                                             GGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATA                                                                                                                                                                                                         <  1:1158410/289‑1                                                                                                          TAAATGCATAATAATCGTTGACATGGCATACCCTCGCGCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCAGCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCCCTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAA                                                                                                                                                                                            <  2:789675/289‑1                                                                                                                  TAATAATCTTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAA                                                                                                                                                                                    >  1:588566/1‑289                                                                                                                        TCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTT                                                                                                                                                                               >  2:1413464/1‑288                                                                                                                                       ACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAAT                                                                                                                                                               <  1:446266/289‑1                                                                                                                                             ACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAAT                                                                                                                                                         >  2:347885/1‑289                                                                                                                                                   TGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGAT                                                                                                                                                                                      >  1:665068/1‑254                                                                                                                                                   TGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGAT                                                                                                                                                                                      <  2:665068/254‑1                                                                                                                                                                                 TTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCA                                                                                                                     <  2:588566/289‑1                                                                                                                                                                                                    AACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTT                                                                                                                                                                                                                                                                       <  1:471633/124‑1                                                                                                                                                                                                    AACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTT                                                                                                                                                                                                                                                                       >  2:471633/1‑124                                                                                                                                                                                                                 ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAA                                                                                     <  1:347885/289‑1                                                                                                                                                                                                                 ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATA                                                                                                                                                                                     <  1:865259/193‑1                                                                                                                                                                                                                 ACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATA                                                                                                                                                                                     >  2:865259/1‑193                                                                                                                                                                                                                        GCGCCACTATCGCGATTTTCCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGACTGGAATTGTCTCAAAGTAATTGTTGCGATTTGAGAGTGCGCTTAAAAAAAATATTTCGCTGCCGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGACAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATT                                                                              >  1:1205877/1‑289                                                                                                                                                                                                                                                                TAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATT                                                                                                                                                                       >  1:166293/1‑160                                                                                                                                                                                                                                                                TAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATT                                                                                                                                                                       <  2:166293/160‑1                                                                                                                                                                                                                                                                                 TGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAA                     <  1:1413464/289‑1                                                                                                                                                                                                                                                                                            GTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTG          <  2:90699/289‑1                                                                                                                                                                                                                                                                                                 AAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGG     <  1:223381/289‑1                                                                                                                                                                                                                                                                                                  AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGG     >  2:1351019/1‑288                                                                                                                                                                                                                                                                                                  AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAAT                            <  2:1062764/265‑1                                                                                                                                                                                                                                                                                                  AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAAT                            >  1:1062764/1‑265                                                                                                                                                                                                                                                                                                      AAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  1:316330/287‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAAGCTATGGCAAGGTCATCAACGGTTTCAATGTCGTTGATTTCTCTTTTTTTAACCCCTCTACTCAACAGATACCCGGTTAAACCTAGTCGGGTGTAACTACATAAATCCATAATAATCGTTGACATGGCATACCCTCACTCAATGCGTAACGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2024096‑2023801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAATAATATCAGCCAGCAAATTAAAAATTTCACTGAATAAATGTTCGCAAAAAGGTGCAATTAACGGCATTAATGCCGCCATTAAAGAGATGCCGACAGTCAGAGTTAATGGAAATCCAATAACAAAAATGGATAATTGCGGGGCCA  <  NC_000913/2023795‑2023512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.