New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 161690578 (0.660)4 (0.040) 4/484 NT 5.0% intergenic (+27/‑123) yneK/ydeA uncharacterized protein/arabinose efflux transporter, arabinose‑inducible
?NC_000913 = 1616917 77 (0.680)intergenic (+39/‑111) yneK/ydeA uncharacterized protein/arabinose efflux transporter, arabinose‑inducible

TGTTTTTATTTTTCGCCAATATGTTATTGCACTATCACCAATTTATGAATCCCAATGAAAGTGATTTGAATGACGTGTTGATGCCAGCATCATTAAGTGATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1616610‑1616905
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctgacgc‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGATAGTGCAAT  <  NC_000913/1616917‑1616635
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
TGTTTTTATTTTTCGCCAATATGTTATTGCACTATCACCAATTTATGAATCCCAATGAAAGTGATTTGAATGACGTGTTGATGCCAGCATCATTAAGTGATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTC                                                                                                                                                                                                                                                                                                      >  2:743525/1‑288
     TTATTTTTCGCCAATATGTTATTGCACTATCACCAATTTATGAATCCCAATGAAAGTGATTTGAATGACGGGTTGATGCCAGCATCATTAAGTGATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGAC                                                                                                                                                                                                                                                                                                <  2:413568/289‑1
                                                                                                  GATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACCCCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAAAATCA‑GCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGG                                                                                                                                                                                                   <  1:158653/288‑1
                                                                                                  GATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACTGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAACAAATAAC‑CGGCAGAGAGTCGGTACAATCCCGGTTTAATGACGTTCAGGGGGGTCTGGCGTTTTGGTGGTTGCGGGctgtggtggt                                                                                                                                                                                                  >  2:158653/1‑279
                                                                                                             TATCAACCATATGGCCCGCAGGACCCTCAAACTGTTTGTAAAAAATGAATCCCCGCCAAAAGTTACTCACGAATACCGGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATTCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCCTTAAACCGTGATGTTACCGACTCT                                                                                                                                                                                                                                                                                                     <  2:884128/180‑1
                                                                                                                                               TTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCA‑GCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGG                                                                                                                                                                                                      >  1:1062863/1‑240
                                                                                                                                               TTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCA‑GCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGG                                                                                                                                                                                                      <  2:1062863/240‑1
                                                                                                                                                                                                                                                                                              TCTCTGACGC‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGATAGT       >  1:823620/1‑288
                                                                                                                                                                                                                                                                                              TCTCTGACGC‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATG                                                                <  1:115319/231‑1
                                                                                                                                                                                                                                                                                              TCTCTGACGC‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATG                                                                >  2:115319/1‑231
                                                                                                                                                                                                                                                                                                  TGACGC‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATTACGTGCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACATGGGAGCGAGGCCTGTTTTTCGCCAGGTCTTCGTGGGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTGGAGGGTCCTGCGGGCCATATGTTTGATAATGTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGATAGTGCAAT  <  2:363734/289‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
TGTTTTTATTTTTCGCCAATATGTTATTGCACTATCACCAATTTATGAATCCCAATGAAAGTGATTTGAATGACGTGTTGATGCCAGCATCATTAAGTGATGATAAAATTATCAAACATATGGCGCGCAGGACCCTCAAACTGTTTGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1616610‑1616905
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctgacgc‑TGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGATAGTGCAAT  <  NC_000913/1616917‑1616635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.