New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1800053 =	119 (0.860)	3 (0.020)	3/506	NT	2.5%	intergenic (‑54/+43)	rpmI/infC	50S ribosomal subunit protein L35/translation initiation factor IF‑3
	?	NC_000913	1800077 =	117 (0.860)					intergenic (‑78/+19)	rpmI/infC	50S ribosomal subunit protein L35/translation initiation factor IF‑3

CGTCCTGGTACAGATGAAGGCGACTATCAGGTAAAACTCCGCAGCCTGATTCGCTTTCTCGAAGAGGGTGATAAAGCCAAAATCACGCTGCGTTTCCGCGGTCGTGAGATGGCGCACCAGCAAATCGGTATGGAAGTGCTTAATCGCGTGAAAGACGATTTGCAAGAACTGGCAGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1800344‑1800053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacagACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGATCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTTACCTGATAGTCGCCTTCATCTGTACCAGGACGGAATTTAATTTCCTTAAC  >  NC_000913/1800077‑1800362                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTCCTGGTACAGATGAAGGCGACTATCAGGTAAAACTCCGCAGCCTGATTCGCTTTCTCGAAGAGGGTGATAAAGCCAAAATCACGCTGCGTTTCCGCGGTCGTGAGATGGCGCACCAGCAAATCGGTATGGAAGTGCTTAATCGCGTGAAAGACGATTTGCAAGAACTGGCAGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCA                                                                                                                                                                                                                                                                                                   <  2:965566/289‑1   TCCTGGTACAGATGAAGGCGACTATCAGGTAAAACTCCGCAGCCTGATTCGCTTTCTCGAAGAGGGTGATAAAGCCAAAATCACGCTGCGTTTCCGCGGTCGTGAGATGGCGCACCAGCAAATCGGTATGGAAGTGCTTAATCGCGTGAAAGACGATTTGCAAGAACTGGCAGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACA                                                                                                                                                                                                                                                                                                 >  1:628721/1‑289                                                                                                                                                                              AGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGAAGCCAGAAGGCCCCACAGACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGACCATCTGGCGGACTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAACTCGTCTTTCACGCGATTAAGCACTTCCCTACCGCTTTGCTGGTCAGCCATCcaccgaacg                                                                                                                      >  2:252677/1‑280                                                                                                                                                                                           tgCCCAACAAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGAAGCCCGAAGGCTCCACAGACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGATCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCG                                                                                                         <  1:252677/287‑1                                                                                                                                                                                                                                                 AAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGAAGCCCGAAGGCTCCACAGACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGATCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTT                                                    >  2:665880/1‑288                                                                                                                                                                                                                                                                                                CACAGACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGATCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTTACCTGATAGTCGCCTTCATCTGTACCAGGACGGAATTTAATTTCCTTA    >  1:688672/1‑289                                                                                                                                                                                                                                                                                                  CAGACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGAGCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTTACCTGATAGTCGCCTTCATCTGTACCAGGACGGAATTTAATTTCCTTAAC  <  1:665880/289‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTCCTGGTACAGATGAAGGCGACTATCAGGTAAAACTCCGCAGCCTGATTCGCTTTCTCGAAGAGGGTGATAAAGCCAAAATCACGCTGCGTTTCCGCGGTCGTGAGATGGCGCACCAGCAAATCGGTATGGAAGTGCTTAATCGCGTGAAAGACGATTTGCAAGAACTGGCAGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1800344‑1800053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacagACAGTGCTACTTGAAGGCCTTACTGTTTCTTCTTAGGAGCGAGCACCATGATCATCTGGCGGCCTTCGATCTTCGTTGGGAAGGATTCGACCACTGCCAGTTCTTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTTACCTGATAGTCGCCTTCATCTGTACCAGGACGGAATTTAATTTCCTTAAC  >  NC_000913/1800077‑1800362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.