New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1070845	110 (0.910)	3 (0.030)	3/504	NT	2.5%	coding (111/591 nt)	rutE	putative malonic semialdehyde reductase
	?	NC_000913	= 1071242	131 (1.120)					coding (524/801 nt)	rutD	putative reactive intermediate detoxifying aminoacrylate hydrolase
Rejected: Frequency below/above cutoff threshold.

AGGCGACGATCAGATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCAGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1070550‑1070845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagggcaAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAGCCAGAAAATGGTGATGCCCTATGGCGGACACGCCTGCAACGTGACCGATCCCGAAACGTTTAATGCTCTGTTACTCAACGGGCTTGCCAGCCTGTTACATCACCGTGAAGCCGCCCTGTAAGGAAT  <  NC_000913/1071242‑1070960                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGGGACGATCAGATAGGGCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCGGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTGCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCAT                                                                                                                                                                                                                                                                                                    <  2:950354/289‑1   GCGACGATCAGATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGGGAACAGTTTGCTGAGGTCGGCCCCCATTTAATCc                                                                                                                                                                                                                                                                                                  >  1:280832/1‑288    CGACGATCAGATAGGCCGGCTGCATGGAACTGTTGCGAAACGCTGGTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACATTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCA                                                                                                                                                                                                                                                                                                  <  1:1089504/288‑1    CGACGATCAGATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCAT                                                                                                                                                                                                                                                                                                    <  2:198177/286‑1        GATCAGATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCAGGGCA                                                                                                                                                                                                                                                                                             <  2:901992/289‑1             GATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAAATGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTCCGGGTAAACACGATCCGTGCCGGATAACAGTTAGCTGTTGTCGTCCCCCATCTCATCAGGGatgaaa                                                                                                                                                                                                                                                                                         >  1:688128/1‑282                                    TTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGGAGTGGTAACCGGTCATAAAATTCACTGTCACAGGCGACGATAGCGGTTACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGACAGTGCCGGGCGCAGCCGTTCTTTTCCTTCTGCCGTGCGGGTAAAACCGATCCCTTCCGGAAAACAGTTAGGTTATTTCGGCCCCCCTTTCATCCGGCACAAAATAtcacgtaccgtaccattccgg                                                                                                                                                                                                                                                                  >  1:440930/1‑267                                                                                                                                    TCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCAGGGCAAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATG                                                                                                                                                                 >  2:1060248/1‑289                                                                                                                                                                      CGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCAGGGCAAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAG                                                                                                                                <  1:1060248/288‑1                                                                                                                                                                                                                                                                                                  CAGGGCAAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAGCCAGAAAATGGTGATGCCCTATGGCGGACACGCCTGCAACGTGACCGATCCCGAAACGTTTAATGCTCTGTTACTCAACGGGCTTGCCAGCCTGTTACATCACCGTGAAGCCGCCCTGTAAGGAA   <  1:73293/289‑1                                                                                                                                                                                                                                                                                                  CAGGGCAAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGGGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAGCCAGAAAATGGTGATGCCCTATGGCGGACACGCCTGCAACGTGACCGATCCCGAAACGTTTAATGCTCTGTTACTCAACGGGCTTGCCAGCCTGTTACATCACCGTGAAGCCGCCCTGTAAGGAA   <  1:70615/289‑1                                                                                                                                                                                                                                                                                                   AGGGCAAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAGCCAGAAAATGGTGATGCCCTATGGCGGACACGCCCGCAACGTGACCGATCCCGAAACGTTTAATGCTCTGTTACTCAACGGGCTTGCCAGCCTGTTACATCACCGTGCAGCCGCCCTGTAAGGAAT  >  2:939945/1‑289                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGCGACGATCAGATAGGCCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAACAGTTAGCTGATGTCGGCCCCCATTTCATCAGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1070550‑1070845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagggcaAAAATAATTTACTGCGTCGACTTAACGCCCTCAAACGCGCTGACTTTAGTCACCATGCGGATCGCATCCGCTGCCCGGTGCAAATCATCTGCGCCAGTGATGATCTGCTGGTGCCAACAGCATGTTCCAGTGAACTTCATGCCGCCCTGCCCGATAGCCAGAAAATGGTGATGCCCTATGGCGGACACGCCTGCAACGTGACCGATCCCGAAACGTTTAATGCTCTGTTACTCAACGGGCTTGCCAGCCTGTTACATCACCGTGAAGCCGCCCTGTAAGGAAT  <  NC_000913/1071242‑1070960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.