| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,325,949 | A→G | 7.6% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,325,949 | 0 | A | G | 7.6% | 186.3 / 3.9 | 69 | intergenic (‑207/+451) | yjdN/yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Reads supporting (aligned to +/- strand): ref base A (32/31); new base G (4/2); total (36/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
TTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTC > NC_000913/4325662‑4326229 | ttCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCCGGCAGTCGGCACC‑At > 2:757150/1‑289 (MQ=255) aaCGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGCCGGCACC‑ATTTCCGGATgg > 1:756079/1‑288 (MQ=255) cgtacgtTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATgcgg < 2:609294/289‑1 (MQ=255) cgtTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTa < 2:756079/289‑1 (MQ=255) gATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAAc > 2:277/1‑288 (MQ=255) aGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTAt < 1:673292/289‑1 (MQ=255) ggCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGGCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTGGTAGGGCTGATAAGACGCGCAAGCGGCGCAACAGGCAGTTGGCACC‑ATTGCCGGATGCGGCGGAAAGGCCTTAt > 2:735352/1‑288 (MQ=255) gCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTacc > 1:122613/1‑286 (MQ=255) aTCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCgg > 2:600780/1‑288 (MQ=255) aTCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCgg > 2:140400/1‑288 (MQ=255) cgTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa < 1:778184/288‑1 (MQ=255) gTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACg < 2:11586/289‑1 (MQ=255) tACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCg < 1:140400/287‑1 (MQ=255) caaagcggtgTAGGGACGTAACGGCAGTGTGGTTAGCTAAGTGAAGAGAGGCCTGTTAAGTGTAGTTACAAATTGATACAGATGAGGGGTGGCCTTTTG‑AGACGCGCGAGCGGCGCATCAGGCAGTCGGCACTGTGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg < 1:780138/279‑1 (MQ=14) aaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg < 1:345371/289‑1 (MQ=255) aaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg > 2:345371/1‑289 (MQ=255) aaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTGCGAAAGTGAGACAGATGAGAGGCGGTCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg > 2:656706/1‑289 (MQ=255) ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGa > 2:440958/1‑289 (MQ=255) tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCATC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGAAAGCGTCGCa > 2:499542/1‑288 (MQ=255) gACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGGCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg < 2:693609/289‑1 (MQ=255) gACCTCAGTGAAGAGAAGCCAGTTAAGTGTAGTTGGAAATGTATACAGATGAGAGGCGGCCTGATA‑AGAAGCGCGAGCGTCGCATGAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 1:14164/288‑1 (MQ=255) aCCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAgg > 2:633638/1‑288 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc < 2:710700/288‑1 (MQ=255) aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCg > 2:214557/1‑289 (MQ=255) agaAGCCAGTTAAGTGTAGTGCGAAAATTATACAGATGGGGGGCGGCCTGATAGAGA‑GCGCGGGCGGCGCATCAGGCAGTGGGCACTGTTGCCGGATGCGTGGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑g < 1:727473/288‑1 (MQ=17) aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAACCGCCTTATCCGGCCTACGGAGGGGGCGGGAATCTGTAGGCCTGATAAGACGCGCAAGCGTCGCACCCGGCAATCCGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTCTCCGGCCTCCGGAGGGGCCGGGAACTTGTAGGCCTGCTAAGACGCGCACGCCTCCCATCGAGCAGTCGGCCCG‑Gttc > 1:18035/1‑287 (MQ=255) aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTAt < 1:96326/212‑1 (MQ=255) aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTAt > 2:96326/1‑212 (MQ=255) aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTg > 2:223848/1‑288 (MQ=255) tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACTGCGGGTGCGGGGATTTGTACGCCTGATAATCAGCGCAAGCGTCGCATCAGGCATCCTGCACC‑CGTGCCGGATgc > 2:424507/1‑289 (MQ=14) ttCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAAAGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGAGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGAAGCGGCGTAAAc > 2:526029/1‑289 (MQ=255) taCAGCGGAGGGGGGGCCTGCGA‑AGACGGGCGGGGGTCGCATCAGGGAGTCGGCACTTTGGCCGGAGGCGGCGTAAACGCCTTTTCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 1:757150/289‑1 (MQ=11) gATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCt > 2:228148/1‑288 (MQ=255) gATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAATTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGGCTTATCAGGCCt > 2:716983/1‑288 (MQ=255) gagGCGGCCGGAGA‑AGACGCGGGAGCGTGGCATCAGGCAGTCGGAACTGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 1:553688/288‑1 (MQ=255) agggcggcCTGATA‑CGAGCGGGGAGCGGCGCATCAGGAAGTCGGCAGTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 1:276234/286‑1 (MQ=11) agGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCCGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAATACGCGACAGCGTCGCCTCAGGCAGTCGGCACC‑TTTGCCGGCTGCGGCGTAAACGCCTTATCCGGCCTACGGTTg > 2:641020/1‑289 (MQ=255) agGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGGCGCATCAGGCAGTCGGCACC‑ATTGCCGGATTCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGTCGGGAATTTGTAGGCCTGCTAAGACGCGCAAGCGTCCCCTCAGGCAGTCGGCACC‑CTTGCCGGATGCGGCTGAAACGCCTTATCCGGCCTACGGCTg > 2:781663/1‑289 (MQ=11) gcCTGATT‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGACTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGATGGTGCg > 2:10640/1‑289 (MQ=255) gcCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa > 1:587564/1‑192 (MQ=34) gcCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa < 2:587564/192‑1 (MQ=34) gcCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGc < 1:126263/265‑1 (MQ=37) gcCTGATA‑AGACGCGCGAGCGTCGCACCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTAGGGCGCCGGAATTTGTAGGCCTGACAAGACGCGCCAGCGCCGCACCAGGCAGGCGCACCC‑GTTGGCCCAGGCGGCGTAAACTCCCTACCCGGccgcagcagggcgcg > 1:635267/1‑276 (MQ=11) tGATA‑AGACGGGCTGGAGTGTCATCAGGAAGTCGGAACTGTTTCCGGATGGGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGa < 1:214557/289‑1 (MQ=11) agcgcgcgAGGGTTGCATGAGGGGATGGGCGCAGTTGCCGGGTGGGGTGAGAACGCCTTATGCGGCCTACGGAGGGGGCGGGAATTTGGAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTGATCCGGCGTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt < 1:633638/287‑1 (MQ=11) aCGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 2:126263/1‑265 (MQ=37) ggcgggtgtggcagacaggagttggaagtGTTGCCGGATGAGGCGGAAACGCCTTGTCCGGGCTAAGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAg < 1:174442/259‑1 (MQ=11) gTTGCCGGAGGGGGAGTAAGCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTGGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTGGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 1:600780/288‑1 (MQ=255) gcggcgTAAAGTCCTTTTCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCa < 1:223848/288‑1 (MQ=37) gcggcgTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCa < 2:390986/288‑1 (MQ=37) cgttATCGGGCCGAGGGAGGGGGCGGGAATGTGTAGTCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGAACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGAt < 1:277/286‑1 (MQ=255) ttATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATACGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATTCGGCGGAAACGCCTTGTCCGGCCTCCGGACGGTCCGGGTCTTTGTAGGGCTGATAAGACCCGCCAGCGTCGCCTCCGGCACTTCGCA‑CTGTTGCCggtgtag > 1:604627/1‑284 (MQ=11) ttATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATgcg < 1:440958/289‑1 (MQ=38) tATCCGGCCTACGGTGGGGGCAGGAATGTGTAGGCCGGATAAAACGCGCAAGCGGCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCCGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATgcg < 1:656706/288‑1 (MQ=255) ggCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATGCGGCGTaa < 2:122613/289‑1 (MQ=38) cGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGt > 1:314076/1‑144 (MQ=32) aaccgatccggcaccaatGTAGGCCTTATACGACGCGCCAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAATCGCCTTATCCGGCCTAC‑‑‑GGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCG‑‑‑GACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTAt < 2:736947/272‑1 (MQ=17) ggggGCGGGAAATTGTGGGCCTGCTAAGACGCGCAAGCGTCGCATCAGGGAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATGCGGCGTAAACGCCTTAt < 1:415586/288‑1 (MQ=255) ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa > 2:565512/1‑99 (MQ=33) ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 1:565512/99‑1 (MQ=33) gTGCGGGAATTTGTAGTCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATCTTGCGGCCTGATAAGACGCGCAAGCGTCGCATCACCCAGTCGGCCCC‑TTTGCCGGATGCGCCGTACACTCCTTATCCTG‑CTACGGGTGGCTCGGGACTTTGTAGTCCTGCTACGACCCTCCCGCCTTCCGTCAGGCATTTCGCA‑CTGTTGCTCGACGCGGCCTCAAccccctccccc > 1:35325/1‑281 (MQ=2) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGCCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGACGGCGCGGGAATTTGTAGGCCTGCTAAGACGCCCCAGCGTCGCACCAGGCCGTCGGCA‑CCGTTGCCAGCCGCCGGGTAAACGCCTTGTcccccc > 1:231810/1‑284 (MQ=11) acttggaaGGGCTGATAAGACGCGCAAGGGGCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTGCGGAGGTTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg < 1:716983/282‑1 (MQ=255) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg > 2:710368/1‑102 (MQ=32) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg < 1:710368/102‑1 (MQ=32) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACCCCCCAGCGTCGCATCCGGCCGTCGGCA‑CTGGTGCCGGTCTCGGCCTAAACGCCTTTTCCGGCCCACGGACGGTGGGGGAAt > 1:571644/1‑289 (MQ=11) cgcgCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGGGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAGAAGACGCGCAAGCGTCGGAGCAGGCAGTTGGCA‑CTGTTGCCGGAGGCGGCGTCATAGCCTGTTCCGCCTTACGGAGGGGGCGGGGATTTGTAg > 1:245399/1‑289 (MQ=11) gCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa > 2:738674/1‑69 (MQ=35) tCGGCACT‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCACCAGGCACTTGGCA‑CTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCGGGTGGGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTc > 1:319897/1‑289 (MQ=16) | TTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATA‑AGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑ATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACC‑GTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA‑CTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTC > NC_000913/4325662‑4326229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |