| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3186094 = | NA (NA) | 41 (0.980) | 35/284 | 0.2 | 95.3% | intergenic (+6/‑91) | yqiG/insC1 | pseudogene, fimbrial export usher family,putative membrane, Not classified, putative membrane protein/IS2 repressor TnpA |
| ? | NC_000913 | = 4049915 | 2 (0.050) | noncoding (18/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
TTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3186235‑3186094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACTTACGAA < NC_000913/4049915‑4049774 TTCCTGTGTGGCACGCCGTCTGCGTTCCTCCGGCCCTAAGACATCAACCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAC < 1:482698/143‑1 TGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAGTCATCTGTTCTCCAATGACTAGTCTAAAGACTAGTATTAAGACTATCACTTATTGAAGTGAGATTTGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCT > 1:399428/1‑143 ttcgtttttttCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTA < 1:364304/132‑1 tccggCGTCTGCGTTCCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTA < 2:170877/138‑1 GTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACT < 2:86020/143‑1 GTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACT > 1:391757/1‑143 TTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATCTAAGTGATATTGATTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTCCGCGACTA > 2:333297/1‑143 CTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACT > 1:350479/1‑143 CGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTA < 1:634794/143‑1 GGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTAC < 1:25786/143‑1 GCCCTAACACATCAATCATCTGTTCTCCGATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACT < 2:428295/143‑1 CTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTGACTCTT > 2:494917/1‑143 AGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGCCTAACTTTCCTCTTTTT > 1:634382/1‑143 TCAATCATCTGTTCGCCAATGACTAGTCTAAAGACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTC < 2:425245/143‑1 AATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAG > 1:259381/1‑143 AAAAACGAGTGTTAAGACTATCACTTATTTAGGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCGGAAAGCACTTTTTGTAATTTTTT < 2:722266/143‑1 AAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTT > 1:552981/1‑143 AAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTT > 2:113056/1‑143 ATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTCTTTGTAATTTTTTTTCTGTTGTT > 2:431772/1‑143 TTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAATTCTTG > 1:447423/1‑143 AGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCAT > 1:560764/1‑143 TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAAT < 2:391757/143‑1 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTT > 2:203314/1‑143 TTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCT > 1:656346/1‑143 ATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGTATAGGAATTTCTCATTGCCATCACA > 2:459777/1‑143 GGTTGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTTCTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAA < 1:533252/143‑1 TGTCTGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGT < 1:441547/143‑1 TGGAGATTCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCATTTGTTGCATAGGATTTTCTATTCGCCATCCCAAAACGTGACc > 2:688129/1‑142 TCAGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGCAATTTCTAATAGCCATCACAAAACGTGCCAGCTTATG > 2:216542/1‑143 AGGGGGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGCCAGCTTATGTT > 1:255520/1‑143 GGGCGCCAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTG < 1:46945/143‑1 GGGCCAGTCTGCTTACGTCTGTCCCCTACGCGACTAACTTCATTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTACTTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTACT < 2:627871/143‑1 CAGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACT < 1:551864/143‑1 AGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGTATAGGAATTTCTAATAGCCATCACAAAACGTTACAGCTTTTTTTGCTTACTT > 2:35943/1‑143 AGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACTT > 1:693320/1‑143 AGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATG < 2:324877/133‑1 AGTCTACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATG > 1:324877/1‑133 GTCTACTGTCCTTTGTCTCCTACGCGACTCACTTTGCTCGTTTTTGTTCAGTTGAGAAAGCACTTTTTGTAATGTTTTTTCAGTGGTGGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCGTACTTA < 2:384543/143‑1 TACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATATCTATCACAAAACGTGACAGCTTATGTTGGTTACTTACGA > 2:477455/1‑143 TACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACTTACGA > 1:345525/1‑143 ACTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACTTACGga > 1:575120/1‑141 TTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3186235‑3186094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTACCTCTGTACCCTACGCGACTAACTTTACTCTTTTTTGTTCAGTTCAGAAAGCACTTTTTGTAATTTTTTTTCAGTTGTTGCATAGGAATTTCTAATAGCCATCACAAAACGTGACAGCTTATGTTGCTTACTTACGAA < NC_000913/4049915‑4049774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |