| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4049911 = | 1 (0.020) | 43 (1.020) | 37/284 | 0.1 | 97.7% | noncoding (14/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+11/+82) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
AACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050048‑4049911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGT < NC_000913/4499512‑4499371 accagAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAGCGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCACATCCGATTACGTGGAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGAT < 1:470403/138‑1 CATCAGGCATTACGGATCTTGTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTA < 1:451868/143‑1 TCAGGCAGTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATA < 1:437211/143‑1 CAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGACTGAAAGATAGAACATCATACTGGATATGCCCCTATAa > 2:224189/1‑142 GCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTC < 1:172594/143‑1 cTTACGTATCTTTTCTTTCCCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCA < 2:332337/142‑1 acgagTCTATTCTTTCTCCCAATAAAAACCGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGAC < 2:652338/138‑1 ACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAAGATTCAGCCAAATCCGATTACGTGAACTAAAAGGTCTGAAAGATAGAACACCTTACTGGATTTAGCCGTATATgtacaaac > 2:608290/1‑135 CGGATCTTTTATTTCTCCCAATAAAAAACGCCCCAGTCATTACTGACTGGCACGGCTAAAATATTCCGCCAAATCCGATTAAGTGAAGTAAAAAGTCTGAAAGATATAACATCTTCCTGGAATTACTCCTATATTTACAGACA > 2:536830/1‑143 TCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTG < 1:377101/143‑1 TCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTG < 1:598682/143‑1 CTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGT < 1:53865/143‑1 TTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTT < 2:165004/143‑1 TTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT > 1:664704/1‑143 TAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCGGCCATCTGTTATCACGTAACCCATT > 1:86710/1‑143 AACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCAAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGCTTTGACCCTATATTTACAGACATCTGTTATCACTTAACACATTACAAG > 2:353511/1‑143 CCCCAGTCATTACTGACTGGGGCGGCTAAAATAATCAGCCAGATCCGACTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCG > 1:31804/1‑143 CCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCT > 1:378837/1‑143 CCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGCTCTCACCTAACCCATTACAAGCCCCCT > 2:643751/1‑143 CAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATCACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTG > 1:105746/1‑143 GTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC < 1:479913/143‑1 ACTGGGGCGGCTAAAACATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTC < 2:341222/143‑1 CTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGCAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATATCCAGAAATCTGTTAACACTTACCCCATTACAAACCCGCAGCCGCAGAcctccc > 2:398724/1‑137 GGCGGGTAGAAGCTTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTG < 2:239074/143‑1 GCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGG < 2:139721/143‑1 CTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCCGATATTCCCGTGGCGAG > 2:42622/1‑143 AATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGAT > 1:533273/1‑143 ATATTCAGCCAAAGCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATA < 2:626134/143‑1 TATTCAGCCAAATCCGCTTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAA < 2:204289/143‑1 TATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAA < 1:447215/143‑1 AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAG > 2:430376/1‑143 CCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTCCAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCgcgcg > 1:134294/1‑138 CGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATTAAAACACCGATGACAAGCCAGCTGCCGCAGATATTCCCGTGGCGAGAGATACCCCAGCGCCCCATG > 2:633996/1‑143 CGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATCACCCAGCGCACTATG > 1:427709/1‑143 AAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGCTATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGCTGCCATccctt > 1:52/1‑138 AAAGGTCTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATATGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTT > 1:379551/1‑143 CTGAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTcttcatg > 1:83363/1‑136 tggAAGATAGAGCATCTTACTGGATCTGCCCCGATATTTCCAGACAGCTGTTATCACTGAGCCCAGTACAAGCCCGCGGCCGCAGATATTCCCGTGGCGAGCGATAGCCCAGCGCACTATGCGGATGCCATTCGTTATAATGC < 2:265550/140‑1 GAAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCT < 1:248720/143‑1 AAAGATAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTC < 1:430376/143‑1 TAGAACATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGAATGCCATTCGTTATAATGCTCGAACG > 2:37460/1‑143 CATCTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCAGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATCCGATATAATGCTCGACCGCCCCT > 2:206394/1‑143 CTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCGTCTGCAAGGT > 2:136812/1‑143 AACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050048‑4049911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGT < NC_000913/4499512‑4499371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |