New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	273987 =	NA (NA)	3 (0.070)	3/272	6.2	NA	intergenic (+33/+114)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator
	?	NC_000913	274057 =	NA (NA)					intergenic (+103/+44)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

GGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT  >  NC_000913/273846‑274089                                                                                                                                              |                                                                                                       gggCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAAGAAGCGGGGAAATGCTTCTCgg                                                                                                       >  2:379218/1‑143 (MQ=255)           tCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                             >  1:603107/1‑143 (MQ=255)               tCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCACGAGAAAGCCAGAGACTTCGCAGCATCGCTGACAGCACTGTTATGGAAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCGGtcatt                                                                                         >  1:282006/1‑143 (MQ=38)                    aaCGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                                                                    >  1:225756/1‑143 (MQ=255)                     aCGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGCTCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt                                                                                   <  2:144059/143‑1 (MQ=255)                      cGCTGTAGTTATGGCTGGATGCGAGTGGTCTCAACGATCCCGCAGGTGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGATGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                  <  2:550/143‑1 (MQ=37)                       gCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCGCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATGAGCGGGGACATCCTTCTCGGCTGACTCAGCCATCTCATttct                                                                                 >  2:531620/1‑143 (MQ=255)                        cAGTCGGTATGCCGAGATGCGCGTGGTCTTCACGATCCCGCAGGAGAAAGCGAGAAACTTCGCCGCATCGCTTACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                <  2:468122/143‑1 (MQ=25)                         aGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGCTAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGCTATGGAAGGTGCGAATAAGCGGGGAAATTGTTCTCGGCTGAAGCAGTCATTTCATttcttc                                                                               >  2:597003/1‑143 (MQ=37)                           tCGGTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                                                             <  1:675092/143‑1 (MQ=255)                                 tGGCGGGATGCGAGTGTTCTCAACGCTCCCCCAGGGGATAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                       <  2:588068/143‑1 (MQ=25)                                    cGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                                                                    >  2:458344/1‑143 (MQ=255)                                        aTGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGTCATTTCATTTCTTCATGTTTGAGCCGCtt                                                                >  2:580577/1‑143 (MQ=255)                                          gCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                                                              >  2:244738/1‑143 (MQ=255)                                                         gATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                               <  1:672778/143‑1 (MQ=255)                                                           tCCAGCAGGAGAAAGTCAGAACCTTCGCCGCTTCGCTGACTGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                             <  2:25636/143‑1 (MQ=17)                                                            cccGCGGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                            >  1:678216/1‑143 (MQ=255)                                                              cGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTACCGTAAATGCCTTGa                                          >  1:444741/1‑143 (MQ=255)                                                               gCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGATATGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTGTGAGCCGAGTGTTTCTGCCGTGAATGCCtttga                                         >  1:417723/1‑140 (MQ=18)                                                                gaGGAGAGAGCGAGAAGCTTCGCCGCACGGCGGATGGCATTGTGATGGAAGGTGCGAATAAGCGGGGAAATTCGTCTCGGCTGACTCAGTCATTTCATTTCTTGATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                        <  2:459010/142‑1 (MQ=14)                                                                  gggggaaggccgAAACTGCGCAGCAGCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTACACCCGTAAATGCCTTGAATCa                                      <  2:483780/132‑1 (MQ=14)                                                                  ggAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                      <  1:395247/143‑1 (MQ=255)                                                                           gaGAAACTTCGCCGAATCGATGACAGCACTGTTATGGAAGTGGCGAATAAGCGGGGAGATTCTCCTAGGCGGCCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTGGTCCTCCCGTAAATGCCTTGAATCAGCCTATTTa                             <  2:396303/142‑1 (MQ=17)                                                                              aaaCTGCGCCGCATCGCGGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc                          <  1:242994/143‑1 (MQ=255)                                                                                  ttCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTCAATGCCTTGACTCAGCCTATTTATAGCGtt                      >  1:341863/1‑143 (MQ=255)                                                                                     gccgcAGCGCGGATTGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTTATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                   <  2:674134/143‑1 (MQ=11)                                                                                            cGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCACGTAAATGCCTTGAATCAGCCTATCTAGGCCGTTTCTTCGCCAt            >  2:298358/1‑143 (MQ=255)                                                                                                   aGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc     <  1:38650/143‑1 (MQ=35)                                                                                                   aGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGGTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCAATGTAAggg     >  1:331018/1‑142 (MQ=255)                                                                                                      ctatttATGCAATGTGTGAATAATCGGGGACATTCTTCTCGTCTGCCTCAGTCATTTCATTTCCTCATGTTTGCGCCGTTTCTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGtt  <  2:93099/139‑1 (MQ=1)                                                                                                                                              |                                                                                                       GGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT  >  NC_000913/273846‑274089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.