New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2919067 =	52 (1.240)	3 (0.070)	3/282	6.4	5.5%	coding (317/1341 nt)	gudD	D‑glucarate dehydratase 1
	?	NC_000913	3131003 =	NA (NA)					coding (828/1017 nt)	insH1	IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT  >  NC_000913/2918925‑2919206                                                                                                                                               |                                                                                                                                            gaagaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCTGTCACGCCACGCATCGTcgtacgta                                                                                                                                             >  1:437075/1‑143 (MQ=255)  gagagCAGATAACCGGGCATTCCGGCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCAGTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAg                                                                                                                                            <  2:178075/142‑1 (MQ=255)   agaaCAGATAACCGAGCATTTCGACTTCGCTACGCTATTAACCATCGCCCAGCAGCGATGACACGATTACCCCCAGATGCTGCCCCAGCAGATCCAGCATCGCCGCTTCTATCCGGGTAGCTACAGGAATGGAGGTACGCAgg                                                                                                                                           >  1:288701/1‑143 (MQ=255)    gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATGGTGGTACGGAGGt                                                                                                                                          >  1:419402/1‑143 (MQ=255)    gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGt                                                                                                                                          >  1:299352/1‑143 (MQ=255)         gATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAAt                                                                                                                                     <  1:94573/143‑1 (MQ=255)          aTAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGGCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGACTAGTCGTACGTAGGACAGATg                                                                                                                                    >  1:114158/1‑143 (MQ=255)             aCCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt                                                                                                                                 <  1:392879/143‑1 (MQ=255)             aCCGACCATGTCCACTTCTCTACTCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCTAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCt                                                                                                                                 <  2:360582/143‑1 (MQ=255)              ccGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTg                                                                                                                                <  1:405683/143‑1 (MQ=255)               cgcgCATTGCGACTTCGCTACGCTGTTGACCACCGCCCAGCAGCGATGCCACGTTTACCCCCAGACGCTGCCGCAGGAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGc                                                                                                                               <  1:457581/140‑1 (MQ=255)                         gcctccGCTACGCTGTTGCCCATCGCCCCGCAGCGATGCCACGTTTCCCCCCGGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGcc                                                                                                                     <  2:453058/138‑1 (MQ=255)                         gACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGAACCAACATTGCCACATCTCTCCCGGTAACTACATGCATAGAGGTACGCAGCTCCAACGCCTGCAAGCAGCGcc                                                                                                                     >  2:552174/1‑143 (MQ=255)                          aCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGccc                                                                                                                    >  2:669915/1‑143 (MQ=255)                            ttCGCTACGCTGTTGACCATCGCCCAGCATCAAGGCCTCGGGTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGGAGGTCAAATGTCTGGAAACCGCGCccac                                                                                                                  >  1:732284/1‑143 (MQ=255)                                         cgACCATCGCCCAGTAGCGATGCCACGGTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATc                                                                                                     <  1:91126/142‑1 (MQ=255)                                          gACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCACACCGCGCCCCCCAGCATAACGATCg                                                                                                    >  1:449456/1‑143 (MQ=255)                                           ggcatcgctgctgggcGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAACCCGCGCCCACCAGCATCACGAGCgg                                                                                                   >  2:509073/15‑143 (MQ=255)                                            ccATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGCGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGc                                                                                                  <  1:556156/143‑1 (MQ=255)                                                 gCCCAGCAGCGATGCCACGTTTCCCCCCAGATGCTGCCCCAGCGGCTCCAGCCTTGCCGCCTCTATCCCGGCAACCACATGCATAGTGGCCCGCACGTCACCTGCCTGCCAACCGCGCCCACCCGCATCACgcactgccaccg                                                                                             >  2:626663/1‑132 (MQ=255)                                                  cgcggaagcGATGCCGCGTTTCCCCCCGGCTGCTGCACCAGCAGATCCAGCGTTGCCGCTGCGATCCCGCGGACTTCAGGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGt                                                                                            <  2:178844/137‑1 (MQ=255)                                                     agcagcGATGCTACGGGTACCCCCAGACGCTGGCTCATCAGATGCAGCATTGCCGCTTCTATCCCGGTACCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAtt                                                                                         <  1:195508/143‑1 (MQ=255)                                                      gcagcGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTa                                                                                        <  1:244812/143‑1 (MQ=255)                                                                cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCCGAAGTATTACGCACCAGCg                                                                              >  1:624840/1‑143 (MQ=255)                                                                cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCg                                                                              >  1:459675/1‑143 (MQ=255)                                                                  cGTGTACCCCCAGATGCTGCTCCCGCAGGTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc                                                                            <  2:34737/143‑1 (MQ=255)                                                                    tttACCCCCAGATGCCGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAg                                                                          <  1:229530/143‑1 (MQ=255)                                                                         ccccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTCCATGAATAGTGGTACGTAGGTCACATGTCTGCAAACCGCGCACACCAGCATCACGATCGGCACAAGTCTCACGCACCCGCGTCacaccgc                                                                     >  2:51507/1‑137 (MQ=255)                                                                          cccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGtt                                                                    >  1:505416/1‑143 (MQ=255)                                                                           ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt                                                                   >  1:682404/1‑143 (MQ=255)                                                                           ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt                                                                   <  1:337258/143‑1 (MQ=255)                                                                           ccAGATGCAGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGAAGTACGTCGGTCAAAGGGCTGCAAACCGCGCGCACCAGCATCACGAGCGGCAAAGGGAGTACGCGCGAGCGTCAGAACGctt                                                                   >  2:223933/1‑143 (MQ=255)                                                                                     ccccAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGGCAGAACGATTTTGTATTCAc                                                         >  2:57433/1‑143 (MQ=255)                                                                                        cagcagATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATACTGGTACGCAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAACAGCATTCCGCACCCGCCCCAGACCGCATCTGTAATCACCCa                                                      >  2:43612/1‑143 (MQ=255)                                                                                            agATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCTCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGt                                                  <  2:365868/143‑1 (MQ=255)                                                                                              aTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGttt                                                <  2:332710/143‑1 (MQ=255)                                                                                                ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTCGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCGGAACGTTTTTGTATTCACCCCGCGtctca                                              >  2:703035/1‑139 (MQ=255)                                                                                                ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTta                                              >  1:473666/1‑143 (MQ=255)                                                                                                     tgggcggCTTCTAAGGCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctac                                         <  2:425172/137‑1 (MQ=255)                                                                                                     agtGCCGATTGTATCCCGGTAACTACACGACTCGTGGTACGGAAGTCAAATGTATGCAAACCGCGCCCACCAGCATCACGATTAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGGATTCACCCATCGTTTtacctac                                         <  2:703183/141‑1 (MQ=255)                                                                                                     aacaccGCTTCTATCCCGGTAACTACATAAATAGTGGTACGAAGGTCAAATGTCTGCAAACCGCGCGCACCAGCATGACGATCGGCAAAAGAATTACGCACCAGCGTCAGAACGTTGTGGTCTTCACCCAGCGTTTcacctac                                         >  2:681757/5‑143 (MQ=255)                                                                                                     aTTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGATTTTGTATTCACCCAGCGTTTtacctac                                         >  2:253302/1‑143 (MQ=255)                                                                                                      ttcctgCTTCTACCCAGCTCACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctacc                                        <  2:114158/138‑1 (MQ=255)                                                                                                       tGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTacca                                       <  1:513638/143‑1 (MQ=255)                                                                                                                 ttctgaaaaaggaCATGAATAGTGATACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAATAGTATTACGCACCAGCGTCAGCACGTTTTTGTATTCAGCCAGCGTTTGACCTACAACCAGCGGAAt                             >  2:252064/13‑143 (MQ=255)                                                                                                                     cGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACGACCGGCGGAATCGCa                         >  2:542086/1‑143 (MQ=255)                                                                                                                          aCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTc                    <  1:473937/143‑1 (MQ=255)                                                                                                                            tACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGGTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGACTCGCATCTTCCa                  >  1:221158/1‑143 (MQ=255)                                                                                                                                    caGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTa          <  2:419402/142‑1 (MQ=255)                                                                                                                                       tGGTACGGATGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACTTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACgg       <  1:693852/143‑1 (MQ=255)                                                                                                                                         gTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAt     >  1:191189/1‑143 (MQ=255)                                                                                                                                            cGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAtttt  <  1:662997/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT  >  NC_000913/2918925‑2919206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.