New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2919067 =52 (1.240)3 (0.070) 3/282 6.4 5.5% coding (317/1341 nt) gudD D‑glucarate dehydratase 1
?NC_000913 3131003 = NA (NA)coding (828/1017 nt) insH1 IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT  >  NC_000913/2918925‑2919206
                                                                                                                                              |                                                                                                                                           
gaagaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCTGTCACGCCACGCATCGTcgtacgta                                                                                                                                             >  1:437075/1‑143 (MQ=255)
 gagagCAGATAACCGGGCATTCCGGCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCAGTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAg                                                                                                                                            <  2:178075/142‑1 (MQ=255)
  agaaCAGATAACCGAGCATTTCGACTTCGCTACGCTATTAACCATCGCCCAGCAGCGATGACACGATTACCCCCAGATGCTGCCCCAGCAGATCCAGCATCGCCGCTTCTATCCGGGTAGCTACAGGAATGGAGGTACGCAgg                                                                                                                                           >  1:288701/1‑143 (MQ=255)
   gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATGGTGGTACGGAGGt                                                                                                                                          >  1:419402/1‑143 (MQ=255)
   gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGt                                                                                                                                          >  1:299352/1‑143 (MQ=255)
        gATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAAt                                                                                                                                     <  1:94573/143‑1 (MQ=255)
         aTAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGGCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGACTAGTCGTACGTAGGACAGATg                                                                                                                                    >  1:114158/1‑143 (MQ=255)
            aCCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt                                                                                                                                 <  1:392879/143‑1 (MQ=255)
            aCCGACCATGTCCACTTCTCTACTCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCTAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCt                                                                                                                                 <  2:360582/143‑1 (MQ=255)
             ccGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTg                                                                                                                                <  1:405683/143‑1 (MQ=255)
              cgcgCATTGCGACTTCGCTACGCTGTTGACCACCGCCCAGCAGCGATGCCACGTTTACCCCCAGACGCTGCCGCAGGAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGc                                                                                                                               <  1:457581/140‑1 (MQ=255)
                        gcctccGCTACGCTGTTGCCCATCGCCCCGCAGCGATGCCACGTTTCCCCCCGGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGcc                                                                                                                     <  2:453058/138‑1 (MQ=255)
                        gACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGAACCAACATTGCCACATCTCTCCCGGTAACTACATGCATAGAGGTACGCAGCTCCAACGCCTGCAAGCAGCGcc                                                                                                                     >  2:552174/1‑143 (MQ=255)
                         aCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGccc                                                                                                                    >  2:669915/1‑143 (MQ=255)
                           ttCGCTACGCTGTTGACCATCGCCCAGCATCAAGGCCTCGGGTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGGAGGTCAAATGTCTGGAAACCGCGCccac                                                                                                                  >  1:732284/1‑143 (MQ=255)
                                        cgACCATCGCCCAGTAGCGATGCCACGGTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATc                                                                                                     <  1:91126/142‑1 (MQ=255)
                                         gACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCACACCGCGCCCCCCAGCATAACGATCg                                                                                                    >  1:449456/1‑143 (MQ=255)
                                          ggcatcgctgctgggcGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAACCCGCGCCCACCAGCATCACGAGCgg                                                                                                   >  2:509073/15‑143 (MQ=255)
                                           ccATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGCGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGc                                                                                                  <  1:556156/143‑1 (MQ=255)
                                                gCCCAGCAGCGATGCCACGTTTCCCCCCAGATGCTGCCCCAGCGGCTCCAGCCTTGCCGCCTCTATCCCGGCAACCACATGCATAGTGGCCCGCACGTCACCTGCCTGCCAACCGCGCCCACCCGCATCACgcactgccaccg                                                                                             >  2:626663/1‑132 (MQ=255)
                                                 cgcggaagcGATGCCGCGTTTCCCCCCGGCTGCTGCACCAGCAGATCCAGCGTTGCCGCTGCGATCCCGCGGACTTCAGGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGt                                                                                            <  2:178844/137‑1 (MQ=255)
                                                    agcagcGATGCTACGGGTACCCCCAGACGCTGGCTCATCAGATGCAGCATTGCCGCTTCTATCCCGGTACCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAtt                                                                                         <  1:195508/143‑1 (MQ=255)
                                                     gcagcGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTa                                                                                        <  1:244812/143‑1 (MQ=255)
                                                               cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCCGAAGTATTACGCACCAGCg                                                                              >  1:624840/1‑143 (MQ=255)
                                                               cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCg                                                                              >  1:459675/1‑143 (MQ=255)
                                                                 cGTGTACCCCCAGATGCTGCTCCCGCAGGTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc                                                                            <  2:34737/143‑1 (MQ=255)
                                                                   tttACCCCCAGATGCCGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAg                                                                          <  1:229530/143‑1 (MQ=255)
                                                                        ccccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTCCATGAATAGTGGTACGTAGGTCACATGTCTGCAAACCGCGCACACCAGCATCACGATCGGCACAAGTCTCACGCACCCGCGTCacaccgc                                                                     >  2:51507/1‑137 (MQ=255)
                                                                         cccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGtt                                                                    >  1:505416/1‑143 (MQ=255)
                                                                          ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt                                                                   >  1:682404/1‑143 (MQ=255)
                                                                          ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt                                                                   <  1:337258/143‑1 (MQ=255)
                                                                          ccAGATGCAGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGAAGTACGTCGGTCAAAGGGCTGCAAACCGCGCGCACCAGCATCACGAGCGGCAAAGGGAGTACGCGCGAGCGTCAGAACGctt                                                                   >  2:223933/1‑143 (MQ=255)
                                                                                    ccccAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGGCAGAACGATTTTGTATTCAc                                                         >  2:57433/1‑143 (MQ=255)
                                                                                       cagcagATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATACTGGTACGCAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAACAGCATTCCGCACCCGCCCCAGACCGCATCTGTAATCACCCa                                                      >  2:43612/1‑143 (MQ=255)
                                                                                           agATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCTCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGt                                                  <  2:365868/143‑1 (MQ=255)
                                                                                             aTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGttt                                                <  2:332710/143‑1 (MQ=255)
                                                                                               ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTCGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCGGAACGTTTTTGTATTCACCCCGCGtctca                                              >  2:703035/1‑139 (MQ=255)
                                                                                               ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTta                                              >  1:473666/1‑143 (MQ=255)
                                                                                                    tgggcggCTTCTAAGGCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctac                                         <  2:425172/137‑1 (MQ=255)
                                                                                                    agtGCCGATTGTATCCCGGTAACTACACGACTCGTGGTACGGAAGTCAAATGTATGCAAACCGCGCCCACCAGCATCACGATTAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGGATTCACCCATCGTTTtacctac                                         <  2:703183/141‑1 (MQ=255)
                                                                                                    aacaccGCTTCTATCCCGGTAACTACATAAATAGTGGTACGAAGGTCAAATGTCTGCAAACCGCGCGCACCAGCATGACGATCGGCAAAAGAATTACGCACCAGCGTCAGAACGTTGTGGTCTTCACCCAGCGTTTcacctac                                         >  2:681757/5‑143 (MQ=255)
                                                                                                    aTTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGATTTTGTATTCACCCAGCGTTTtacctac                                         >  2:253302/1‑143 (MQ=255)
                                                                                                     ttcctgCTTCTACCCAGCTCACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctacc                                        <  2:114158/138‑1 (MQ=255)
                                                                                                      tGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTacca                                       <  1:513638/143‑1 (MQ=255)
                                                                                                                ttctgaaaaaggaCATGAATAGTGATACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAATAGTATTACGCACCAGCGTCAGCACGTTTTTGTATTCAGCCAGCGTTTGACCTACAACCAGCGGAAt                             >  2:252064/13‑143 (MQ=255)
                                                                                                                    cGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACGACCGGCGGAATCGCa                         >  2:542086/1‑143 (MQ=255)
                                                                                                                         aCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTc                    <  1:473937/143‑1 (MQ=255)
                                                                                                                           tACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGGTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGACTCGCATCTTCCa                  >  1:221158/1‑143 (MQ=255)
                                                                                                                                   caGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTa          <  2:419402/142‑1 (MQ=255)
                                                                                                                                      tGGTACGGATGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACTTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACgg       <  1:693852/143‑1 (MQ=255)
                                                                                                                                        gTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAt     >  1:191189/1‑143 (MQ=255)
                                                                                                                                           cGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAtttt  <  1:662997/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT  >  NC_000913/2918925‑2919206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.