Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 31 [0] [1] 32 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)30 (0.770) 24/264 0.6 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815803‑3816080
                                                                                                                                         |                                                                                                                                            
tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                         <  2:549038‑M2/6‑1 (MQ=255)
  cttgcgaagcgcaaatgcaataagctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCt                                                                                                                                       <  1:213683‑M2/8‑1 (MQ=255)
          gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagagccgccttctggCGGCCACTGCCCTTCa                                                                                                                               >  1:115288‑M2/128‑143 (MQ=255)
               aattcaacaatccggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                          <  2:53450‑M2/21‑1 (MQ=255)
               aatgcaatcagctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                          <  2:78621‑M2/21‑1 (MQ=255)
                 ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATgc                                                                                                                        >  1:390710‑M2/121‑143 (MQ=255)
                   caataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                      <  1:375182‑M2/25‑1 (MQ=255)
                   caagaaactggcgagaatatggtttcatgccttcggtcctcatcatactttactaaagacaaaaaaaaggcgactcataagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                      <  2:137997‑M2/25‑1 (MQ=255)
                    aataaactggcgctgatatggtttcatgccttcgctcctggtgttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                                     >  1:172457‑M2/118‑143 (MQ=255)
                     ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagacgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCACCTCAATGatgcgcac                                                                                                                    >  1:138187‑M2/117‑141 (MQ=255)
                                  gatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGGtcatc                                                                                                       >  1:67321‑M2/104‑143 (MQ=255)
                                             atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                            <  1:628626‑M2/51‑1 (MQ=255)
                                               gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttcaaaatcagtttgccagagccgcctcccgcCGTTCCCGGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCTTGt                                                                                          >  1:270888‑M2/91‑143 (MQ=255)
                                                 ctgcgcttctcatctgacttgacgacagacaaaaaaaaggcgactcagcagtcgccttaaagatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                        <  2:448391‑M2/55‑1 (MQ=255)
                                                     gctcctcatctgacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                                    <  2:15845‑M2/59‑1 (MQ=255)
                                                         gtcaggttactgttctacagacaaaaaaaaggcggctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTTCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                                                                <  1:402735‑M2/63‑1 (MQ=255)
                                                               ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                          <  1:10474‑M2/69‑1 (MQ=255)
                                                                   ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCGCTGCGGCAGAGTCt                                                                      >  1:97806‑M2/71‑143 (MQ=255)
                                                                     ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCACAGTCTTc                                                                    >  2:482518‑M2/69‑143 (MQ=255)
                                                                        tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                 >  1:267956‑M2/66‑143 (MQ=255)
                                                                        gttcggtcgttctgaggcgactgatgagtcgcattaaaaatcagttggccagcgccgccttctgcTGTCTCCTGCACTTCAATGATGCGCGCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                 <  2:194615‑M2/78‑1 (MQ=255)
                                                                             acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                                                            >  1:363226‑M2/61‑143 (MQ=255)
                                                                               atttttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                          >  2:594293‑M2/59‑143 (MQ=255)
                                                                                   aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                      <  1:53096‑M2/89‑1 (MQ=255)
                                                                                             tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCAAGATCGCAAACCGc                                            >  1:555423‑M2/45‑143 (MQ=255)
                                                                                             tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAAAGTCTTCAACGTATTCCAGATCGAAAACGGc                                            >  1:426489‑M2/45‑143 (MQ=255)
                                                                                                         ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAAAtcgcaaacagctgcatcacacac                                >  2:539535‑M2/33‑132 (MQ=255)
                                                                                                         ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGttccc                                >  1:89470‑M2/33‑141 (MQ=255)
                                                                                                           aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCCTCGGCCATCACTACCTCCACGTCGGTCTCTTCGGCAGAGCCTTCACCGTATTCCAGCTCTCAAACCGCTTCGCCCTTCCCaa                              >  2:712222‑M2/31‑143 (MQ=255)
                                                                                                             aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGCCGCGCACGGCGGCAGAGTCGTCAACGTATGCCACATCGCAAACCGCTCCGCCGTCCACAAtt                            >  1:336266‑M2/29‑143 (MQ=255)
                                                                                                                       gccagcgcctctttCTGCCGGCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCATCCCTACGTCCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGATCGTAAACCGCTTCGCCGTTCACACTTCCGACAGaaa                  <  1:91947/131‑1 (MQ=255)
                                                                                                                                       gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGATCTCTGCGGCAGAGTCTTCAACGTATTCCCAATCGCACACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCGGCTAGCAGccc  >  2:406248‑M2/3‑143 (MQ=255)
                                                                                                                                         |                                                                                                                                            
AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815803‑3816080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: