New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	354606 =	NA (NA)	3 (0.110)	3/270	3.8	12.0%	noncoding (8/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
	?	NC_000913	354654 =	22 (0.830)					noncoding (56/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGA  >  NC_000913/354473‑354719                                                                                                                                      |                                                                                                                  tCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTcgcgcg                                                                                                          >  1:165410/1‑143 (MQ=255)          aTGCGGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCg                                                                                                 <  1:335216/143‑1 (MQ=255)           tgctgcGCCGCACGATCCAGGCGATTTGCGAAGGATGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCgg                                                                                                <  1:311740/143‑1 (MQ=255)                      cggATCGAGGCGCGGTGCGAGGGACGGGTTCGTGGAGATCTGACGCCCATTGGTGGTCCTGCGTCGTTGGTTCGGATCCGCGAGGGGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGcc                                                                                     <  2:183377/141‑1 (MQ=255)                         aTCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGGCCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGAt                                                                                  <  1:142893/143‑1 (MQ=255)                                         aaggacgaacacgtGGTGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTg                                                                  <  1:299677/130‑1 (MQ=255)                                         aaGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTg                                                                  >  1:157329/1‑143 (MQ=255)                                                             cTGACGTCCATTGATTATTGTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGAGGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTAc                                              <  1:131735/143‑1 (MQ=39)                                                                  gaccaggggtgagCCGGCGGCGTGGGATCAGAGCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTTTCATGCCTACGGAcc                                         <  1:113639/134‑1 (MQ=38)                                                                       ttGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGTGACGCTGACGCGTTTTATCATGCCTACGGGCCTGAAc                                    >  1:118899/1‑143 (MQ=255)                                                                                   cgtcgtGGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTGATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGAt                        <  1:195238/143‑1 (MQ=255)                                                                                     tcgtTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATaa                      <  1:360821/143‑1 (MQ=255)                                                                                     tcgtTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGCTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATaa                      >  2:163689/1‑143 (MQ=255)                                                                                        ttGGATCAGATCCGCCAGGCGAGGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc                   <  1:3412/143‑1 (MQ=255)                                                                                           gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCAGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgcgcc                >  1:57871/1‑142 (MQ=255)                                                                                                 aTCCGCCAGTGGATGGAAGAGTAGGTTATGGTCGGCCGCCTCTCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAGGCGACGCTGACGCGTTTTATCATGCCCACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTc          <  1:246306/143‑1 (MQ=255)                                                                                                     gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt      >  1:237405/1‑143 (MQ=255)                                                                                                         ggCGATGGAAGAGTAGGTTACTGTCGGATGCCGCGCCCGGTGCACCCCACACTGTGGGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGa  <  1:179870/143‑1 (MQ=38)                                                                                                                                      |                                                                                                                  TCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGA  >  NC_000913/354473‑354719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.